Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 9.0e-103 377.1 213 100.0
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 1.7e-45 186.8 185 59.5
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 2.7e-43 179.5 214 49.5
TAR622G1347 Trochodendron aralioides HOM05D034691 ORTHO05D005932 5.0e-37 158.7 185 53.0
Nn3g17332 Nelumbo nucifera HOM05D009095 ORTHO05D005932 5.2e-34 148.7 226 46.5
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 1.3e-29 134.0 229 46.3
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 1.7e-29 133.7 207 44.9
Nn4g23279 Nelumbo nucifera HOM05D034691 ORTHO05D005932 6.6e-29 131.7 221 43.0
GSVIVG01019947001 Vitis vinifera HOM05D009095 ORTHO05D005932 1.9e-28 130.2 205 42.4
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 2.8e-27 126.3 222 39.6
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 2.3e-26 123.2 211 38.9
Duzib251G0477 Durio zibethinus HOM05D009095 ORTHO05D005932 4.4e-25 119.0 211 40.3
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 5.7e-25 118.6 204 41.7
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 7.5e-25 118.2 221 42.1
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 9.8e-25 117.9 218 44.0
QL03p069741 Quercus lobata HOM05D009095 ORTHO05D005932 6.4e-24 115.2 214 44.4
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 8.3e-24 114.8 229 40.6
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 2.7e-22 109.8 221 39.4
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.5e-20 104.0 229 38.4
Actinidia19933 Actinidia chinensis HOM05D000944 ORTHO05D003581 2.8e-19 99.8 191 37.7
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 2.8e-19 99.8 216 36.6
Aqoxy3G03491 Aquilegia oxysepala HOM05D037250 ORTHO05D005932 1.4e-18 97.4 238 31.5
COL.COLO4_27972 Corchorus olitorius HOM05D009095 ORTHO05D005932 1.4e-18 97.4 223 35.0
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 3.1e-18 96.3 172 40.1
MBI16_g25840_MAGBIO Magnolia biondii HOM05D036885 ORTHO05D034247 6.8e-18 95.1 204 37.3
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 6.8e-18 95.1 218 34.9
CANSAT54G2635 Cannabis sativa HOM05D009095 ORTHO05D005932 8.9e-18 94.7 212 37.7
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 8.9e-18 94.7 199 34.2
Ah.03g134680 Amaranthus hybridus HOM05D036760 ORTHO05D031035 1.5e-17 94.0 215 32.6
arahy.Tifrunner.gnm1.ann1.3IH7MW Arachis hypogaea HOM05D013667 ORTHO05D005932 1.5e-17 94.0 120 46.7
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 2.6e-17 93.2 178 48.9
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 2.6e-17 93.2 192 42.7
PSO063G1636 Papaver somniferum HOM05D037250 ORTHO05D050201 5.8e-17 92.0 226 42.9
Cc11_g12580 Coffea canephora HOM05D020902 ORTHO05D005932 9.8e-17 91.3 213 31.9
PSO063G4624 Papaver somniferum HOM05D037250 ORTHO05D050201 9.8e-17 91.3 220 43.6
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 2.9e-16 89.7 217 37.8
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 4.9e-16 89.0 193 42.5
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 6.4e-16 88.6 178 48.3
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 8.3e-16 88.2 208 34.6
arahy.Tifrunner.gnm1.ann1.G7V7VG Arachis hypogaea HOM05D013667 ORTHO05D005932 1.1e-15 87.8 120 45.0
Cpa.g.c38098 Carica papaya HOM05D009095 ORTHO05D005932 1.1e-15 87.8 184 35.3
Potri.017G079000 Populus trichocarpa HOM05D009095 ORTHO05D005932 1.4e-15 87.4 213 36.6
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 1.4e-15 87.4 208 39.4
Gohir.A03G102500 Gossypium hirsutum HOM05D009095 ORTHO05D005932 4.1e-15 85.9 215 32.6
Phvul.002G169000 Phaseolus vulgaris HOM05D013667 ORTHO05D005932 5.4e-15 85.5 122 41.8
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 5.4e-15 85.5 215 39.1
Gohir.A12G163200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 9.2e-15 84.7 210 30.5
Gorai.008G179000 Gossypium raimondii HOM05D009095 ORTHO05D005932 1.6e-14 84.0 211 30.3
Peaxi162Scf00408g00521 Petunia axillaris HOM05D020902 ORTHO05D005932 1.6e-14 84.0 124 39.5
Sabra17G0070100 Salix brachista HOM05D009095 ORTHO05D005932 2.0e-14 83.6 228 33.3
Gorai.005G143000 Gossypium raimondii HOM05D009095 ORTHO05D005932 3.5e-14 82.8 215 33.0
Lj9A467T87 Lonicera japonica HOM05D008369 ORTHO05D005932 4.6e-14 82.4 216 36.6
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 4.6e-14 82.4 176 40.9
ClCG09G021960 Citrullus lanatus HOM05D029799 ORTHO05D005932 1.3e-13 80.9 186 34.9
Gohir.D12G166200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 1.3e-13 80.9 210 29.0
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 1.7e-13 80.5 203 35.0
CSS0039450 Camellia sinensis var. sinensis HOM05D009095 ORTHO05D005932 3.0e-13 79.7 185 39.5
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 5.0e-13 79.0 205 40.0
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 5.0e-13 79.0 191 40.8
Lsat_1_v5_gn_8_49101 Lactuca sativa HOM05D009095 ORTHO05D005932 1.1e-12 77.8 227 32.2
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.9e-12 77.0 208 33.2
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 2.5e-12 76.6 59 57.6
Ca_23884_v3 Cicer arietinum L. HOM05D013667 ORTHO05D005932 3.3e-12 76.3 126 38.1
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 3.3e-12 76.3 185 31.9
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 3.3e-12 76.3 209 32.1
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 4.3e-12 75.9 221 33.9
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 4.3e-12 75.9 194 38.1
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 5.6e-12 75.5 197 38.6
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 1.6e-11 73.9 125 43.2
vmacro17570 Vaccinium macrocarpon HOM05D008369 ORTHO05D005932 2.1e-11 73.6 195 32.3
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 4.7e-11 72.4 207 33.8
MELO3C002975.2 Cucumis melo HOM05D029799 ORTHO05D005932 6.2e-11 72.0 180 36.1
QL03p069756 Quercus lobata HOM05D012615 ORTHO05D005932 6.2e-11 72.0 96 43.8
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 8.1e-11 71.6 215 31.2
Peaxi162Scf00187g01112 Petunia axillaris HOM05D020902 ORTHO05D005932 8.1e-11 71.6 212 30.7
Medtr4g082330 Medicago truncatula HOM05D013667 ORTHO05D005932 1.1e-10 71.2 118 38.1
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.4e-10 70.9 180 32.2
Hund25207 Selenicereus undatus HOM05D009095 ORTHO05D005932 1.4e-10 70.9 212 31.1
ClCG04G012080 Citrullus lanatus HOM05D008369 ORTHO05D005932 1.8e-10 70.5 177 39.5
Lalb_Chr09g0329161 Lupinus albus HOM05D013667 ORTHO05D005932 1.8e-10 70.5 90 44.4
TPR.G34048 Trifolium pratense HOM05D013667 ORTHO05D005932 2.3e-10 70.1 198 27.3
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 3.1e-10 69.7 206 35.4
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 3.1e-10 69.7 170 35.3
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 4.0e-10 69.3 180 36.1
PGR102G2341 Punica granatum HOM05D009095 ORTHO05D005932 4.0e-10 69.3 220 30.9
PGSC0003DMG400002821 Solanum tuberosum HOM05D020902 ORTHO05D005932 4.0e-10 69.3 106 39.6
THA.LOC104805944 Tarenaya hassleriana HOM05D012098 ORTHO05D005932 4.0e-10 69.3 83 45.8
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 5.2e-10 68.9 179 36.9
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 8.9e-10 68.2 204 33.8
CDE02G1239 Ceratophyllum demersum HOM05D036885 ORTHO05D034247 1.5e-09 67.4 203 31.0
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 1.5e-09 67.4 207 34.8
HanXRQChr08g0210661 Helianthus annuus HOM05D009095 ORTHO05D005932 1.5e-09 67.4 103 43.7
Solyc04g005555.1 Solanum lycopersicum HOM05D020902 ORTHO05D005932 1.5e-09 67.4 107 41.1
CDE04G2229 Ceratophyllum demersum HOM05D036885 ORTHO05D034247 2.0e-09 67.0 204 31.9
Zm00001eb326510 Zea mays HOM05D039597 ORTHO05D050096 2.0e-09 67.0 186 32.8
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 3.4e-09 66.2 177 41.2
Sopen04g001590 Solanum pennellii HOM05D020902 ORTHO05D005932 5.8e-09 65.5 107 40.2
Glyma.20G031200 Glycine max HOM05D013667 ORTHO05D005932 9.8e-09 64.7 118 35.6
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 1.7e-08 63.9 190 36.8
Carub.0005s0227 Capsella rubella HOM05D012098 ORTHO05D005932 2.2e-08 63.5 93 36.6
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 6.4e-08 62.0 201 31.3
Sed0012343 Sechium edule HOM05D029799 ORTHO05D005932 6.4e-08 62.0 122 38.5
AT2G03310 Arabidopsis thaliana HOM05D012098 ORTHO05D005932 8.3e-08 61.6 81 40.7
ATR0730G100 Amborella trichopoda HOM05D009095 ORTHO05D005932 1.4e-07 60.8 229 28.4
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 1.4e-07 60.8 162 32.1
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.4e-07 60.8 201 30.8
Lj4g0010683 Lotus japonicus HOM05D008369 ORTHO05D005932 1.4e-07 60.8 162 36.4
MELO3C002000.2 Cucumis melo HOM05D008369 ORTHO05D005932 1.9e-07 60.5 190 36.3
Lj4g0019858 Lotus japonicus HOM05D013667 ORTHO05D005932 1.9e-07 60.5 93 43.0
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 2.4e-07 60.1 195 29.7
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 5.4e-07 58.9 157 36.3
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 7.1e-07 58.5 223 30.0
Thhalv10004995m.g Eutrema salsugineum HOM05D012098 ORTHO05D005932 7.1e-07 58.5 81 35.8
AL5G13000 Arabidopsis lyrata HOM05D012098 ORTHO05D005932 9.2e-07 58.2 81 38.3
Thhalv10005531m.g Eutrema salsugineum HOM05D012098 ORTHO05D005932 9.2e-07 58.2 81 35.8
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 9.2e-07 58.2 110 40.9
Atru.chr11.1719 Acer truncatum HOM05D009095 ORTHO05D005932 1.2e-06 57.8 180 38.3
CARHR145660 Cardamine hirsuta HOM05D012098 ORTHO05D005932 1.2e-06 57.8 81 37.0
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 1.6e-06 57.4 170 32.9
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 2.1e-06 57.0 201 30.3
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 3.5e-06 56.2 155 31.6
MSTRG.11371 Avicennia marina HOM05D012087 ORTHO05D005932 4.6e-06 55.8 225 33.8
A09p24330 Brassica napus HOM05D012098 ORTHO05D005932 4.6e-06 55.8 81 37.0
A09p24340 Brassica napus HOM05D012098 ORTHO05D005932 4.6e-06 55.8 81 37.0
CANSAT80G1936 Cannabis sativa HOM05D008369 ORTHO05D005932 6.0e-06 55.5 189 33.3
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 6.0e-06 55.5 223 27.4
BcaC04g21493 Brassica carinata HOM05D012098 ORTHO05D005932 7.8e-06 55.1 81 35.8
C09p31170 Brassica napus HOM05D012098 ORTHO05D005932 7.8e-06 55.1 81 35.8
BolC9t55974H Brassica oleracea HOM05D012098 ORTHO05D005932 7.8e-06 55.1 81 35.8
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 7.8e-06 55.1 119 38.7
Hund02625 Selenicereus undatus HOM05D008369 ORTHO05D005932 7.8e-06 55.1 222 35.1


User provided reference genes

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