Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.8e-213 743.8 399 100.0
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 6.9e-173 610.9 396 84.8
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.1e-169 599.4 396 84.1
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 3.7e-166 588.6 396 82.8
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 6.1e-161 571.2 397 81.1
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 3.4e-156 555.4 395 80.0
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.7e-150 536.6 395 77.7
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.5e-148 530.0 395 77.0
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 5.9e-148 528.1 395 76.5
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 1.0e-147 527.3 395 76.7
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.2e-147 526.2 395 77.7
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 2.2e-147 526.2 395 77.0
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 3.8e-147 525.4 395 76.5
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 8.5e-147 524.2 394 74.6
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 1.5e-146 523.5 395 76.7
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 2.1e-145 519.6 402 74.6
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.5e-143 513.5 394 75.4
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 4.1e-141 505.4 395 75.4
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.6e-140 503.4 395 74.4
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 4.5e-140 501.9 395 75.4
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 7.7e-140 501.1 394 74.1
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.1e-138 497.3 394 73.6
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.7e-131 473.4 394 70.8
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.5e-122 443.0 372 69.4
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.2e-122 442.2 374 69.3
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 4.2e-122 442.2 405 65.2
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 5.6e-122 441.8 405 64.9
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 6.1e-121 438.3 406 66.5
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 7.5e-119 431.4 405 64.4
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 1.0e-115 421.0 406 64.3
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 2.9e-115 419.5 405 64.7
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 2.9e-115 419.5 405 62.7
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 3.3e-114 416.0 405 62.2
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.6e-114 415.2 406 61.8
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 9.5e-114 414.5 405 61.2
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.6e-113 413.7 406 61.8
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 4.7e-113 412.1 405 63.0
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.4e-112 410.6 407 61.2
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 1.8e-112 410.2 405 61.0
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 2.3e-112 409.8 357 68.1
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.1e-112 409.5 307 72.3
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 1.2e-111 407.5 406 62.6
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.0e-111 406.8 357 67.8
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 2.6e-111 406.4 370 62.7
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 7.5e-111 404.8 306 72.9
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 2.2e-110 403.3 356 69.4
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 2.2e-110 403.3 411 59.4
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 6.4e-110 401.7 407 60.7
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 1.4e-109 400.6 407 62.9
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 1.9e-109 400.2 393 62.6
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 5.4e-109 398.7 406 60.1
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 1.6e-108 397.1 404 62.4
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.6e-108 397.1 409 61.4
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 3.5e-108 396.0 403 61.0
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 1.0e-107 394.4 395 63.0
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 1.7e-107 393.7 398 61.1
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 3.0e-107 392.9 405 59.8
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 6.6e-107 391.7 356 63.8
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 8.6e-107 391.3 405 60.7
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 8.6e-107 391.3 407 59.0
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 1.1e-106 391.0 384 61.7
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 1.5e-106 390.6 406 59.1
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 1.9e-106 390.2 406 57.4
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 2.5e-106 389.8 353 66.3
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 2.5e-106 389.8 353 66.3
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 2.5e-106 389.8 405 59.0
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 3.3e-106 389.4 406 59.4
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 4.3e-106 389.0 401 60.1
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 9.5e-106 387.9 356 64.9
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.2e-105 387.5 370 64.6
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.1e-105 386.7 404 59.2
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 2.8e-105 386.3 403 61.0
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.8e-105 386.3 404 59.4
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 4.7e-105 385.6 404 61.1
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.1e-104 384.4 363 64.5
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.4e-104 384.0 276 72.8
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.8e-104 383.6 354 66.1
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.1e-104 382.9 276 72.5
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 4.0e-104 382.5 400 60.0
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 6.8e-104 381.7 396 58.6
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.2e-103 380.9 408 59.8
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.5e-103 380.6 406 59.6
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.6e-103 379.8 406 56.9
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.6e-103 379.8 406 56.9
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 9.8e-103 377.9 406 59.1
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.7e-102 377.1 307 69.4
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.7e-102 377.1 307 69.4
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.7e-102 377.1 403 58.1
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 2.2e-102 376.7 307 68.1
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 2.2e-102 376.7 355 65.4
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.4e-101 374.0 400 59.0
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 2.4e-101 373.2 360 64.2
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 4.1e-101 372.5 403 56.8
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 5.4e-101 372.1 405 55.1
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 9.2e-101 371.3 404 59.4
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 2.7e-100 369.8 306 68.0
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 4.6e-100 369.0 355 63.9
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 7.8e-100 368.2 406 59.6
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 7.8e-100 368.2 403 59.1
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 7.8e-100 368.2 395 60.8
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.0e-99 367.9 403 58.3
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 1.3e-99 367.5 354 64.1
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.7e-99 367.1 374 61.8
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.7e-99 367.1 404 56.7
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.3e-99 366.7 407 57.7
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 3.0e-99 366.3 403 57.6
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.0e-99 366.3 406 59.1
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 1.5e-98 364.0 404 58.7
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.5e-98 364.0 355 60.0
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.5e-98 363.2 276 68.1
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 2.5e-98 363.2 276 68.1
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 3.3e-98 362.8 403 57.6
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 5.6e-98 362.1 276 67.8
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 7.3e-98 361.7 403 58.3
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 9.5e-98 361.3 275 67.6
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 2.1e-97 360.1 363 63.4
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 6.2e-97 358.6 413 55.7
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.4e-96 357.5 391 59.1
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.1e-96 356.3 415 55.2
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 3.1e-96 356.3 272 68.4
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 2.6e-95 353.2 404 57.2
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 7.6e-95 351.7 271 67.5
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 7.6e-95 351.7 276 67.0
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 1.3e-94 350.9 403 57.6
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 3.7e-94 349.4 406 55.4
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 6.4e-94 348.6 405 56.5
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.4e-93 347.4 405 56.0
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 7.1e-93 345.1 406 56.9
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 8.6e-91 338.2 276 65.2
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 3.3e-90 336.3 404 52.2
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 4.3e-90 335.9 403 53.3
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 9.6e-90 334.7 389 53.0
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 2.8e-89 333.2 271 65.3
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 2.0e-87 327.0 271 62.7
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 2.2e-86 323.6 358 58.1
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 7.1e-85 318.5 358 58.9
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 7.1e-85 318.5 358 58.9
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.2e-84 317.8 358 57.5
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.1e-84 317.0 344 59.0
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 1.3e-81 307.8 306 62.4
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 8.7e-75 285.0 277 57.4
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 1.1e-72 278.1 373 52.5
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.4e-72 277.7 278 56.1
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.5e-71 274.2 266 57.9
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 2.6e-71 273.5 364 52.2
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.9e-69 267.3 357 51.5
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.5e-69 265.8 303 58.7
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 2.5e-66 256.9 399 47.9
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.0e-62 245.0 244 53.7
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.1e-61 241.5 244 52.5
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.4e-61 241.1 328 47.3
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 1.2e-60 238.0 359 51.5
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 2.7e-60 236.9 254 52.0
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.0e-59 235.0 266 49.2
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 1.9e-58 230.7 358 50.6
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 3.3e-58 229.9 357 50.1
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 7.4e-58 228.8 304 53.6
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 8.2e-57 225.3 362 43.9
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.7e-54 217.6 297 46.5
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.1e-53 214.9 355 47.0
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.5e-53 212.6 362 41.4
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 4.6e-52 209.5 337 41.5
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.1e-51 206.1 280 46.1
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 4.8e-49 199.5 348 44.8
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 4.8e-49 199.5 348 44.8
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 6.9e-48 195.7 253 46.2
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 2.9e-46 190.3 349 39.5
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.0e-43 180.3 364 37.9
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 3.4e-39 166.8 253 52.2
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.4e-39 166.8 146 58.2
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 2.0e-34 151.0 231 52.4
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 4.8e-33 146.4 248 48.4
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 8.2e-33 145.6 81 88.9
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 6.5e-30 136.0 278 37.4
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.5e-29 134.8 93 74.2
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.7e-14 84.7 43 97.7


User provided reference genes

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