Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.4e-63 245.4 124 100.0
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 9.0e-63 243.4 124 96.0
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 9.0e-63 243.4 124 96.0
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 9.0e-63 243.4 124 96.0
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 2.6e-62 241.9 124 95.2
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 2.6e-62 241.9 124 95.2
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 7.6e-62 240.4 124 96.0
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 1.3e-61 239.6 124 95.2
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 5.5e-60 234.2 124 92.7
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.2e-59 233.0 124 91.1
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 1.6e-59 232.6 124 92.7
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 2.1e-59 232.3 124 91.9
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 3.0e-58 228.4 121 92.6
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 2.4e-55 218.8 124 83.9
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 4.3e-49 198.0 124 76.6
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 4.1e-47 191.4 114 87.7
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 7.7e-46 187.2 124 66.9
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.3e-45 186.4 124 66.9
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 6.5e-45 184.1 124 66.1
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 6.5e-45 184.1 124 66.9
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 8.5e-45 183.7 124 66.9
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 8.5e-45 183.7 124 66.9
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.1e-44 183.3 124 66.1
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 1.4e-44 183.0 124 66.9
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 7.2e-44 180.6 124 66.9
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 9.4e-44 180.3 124 66.9
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 9.4e-44 180.3 121 68.6
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.2e-43 179.9 110 87.3
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.2e-43 179.9 110 87.3
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.6e-43 179.5 121 68.6
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 3.6e-43 178.3 124 66.1
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 3.6e-43 178.3 124 68.5
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 4.6e-43 177.9 120 69.2
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 4.6e-43 177.9 124 66.9
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 6.1e-43 177.6 121 68.6
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 6.1e-43 177.6 121 66.1
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.0e-42 176.8 120 68.3
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.0e-42 176.8 121 68.6
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.4e-42 176.4 121 68.6
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.4e-42 176.4 121 66.1
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 1.8e-42 176.0 121 67.8
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.8e-42 176.0 120 68.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.8e-42 176.0 120 68.3
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.8e-42 176.0 120 68.3
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.8e-42 176.0 120 68.3
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.8e-42 176.0 124 65.3
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.3e-42 175.6 121 66.9
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 2.3e-42 175.6 124 65.3
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 5.1e-42 174.5 121 66.1
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 8.8e-42 173.7 120 65.8
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 8.8e-42 173.7 124 65.3
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.1e-41 173.3 118 66.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.5e-41 172.9 124 64.5
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.5e-41 172.9 123 65.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.0e-41 172.6 121 66.9
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.0e-41 172.6 120 67.5
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 2.0e-41 172.6 120 66.7
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 2.0e-41 172.6 121 64.5
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 3.3e-41 171.8 121 65.3
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 4.3e-41 171.4 125 76.8
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 4.3e-41 171.4 120 64.2
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 5.7e-41 171.0 121 65.3
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 7.4e-41 170.6 123 61.8
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 7.4e-41 170.6 121 64.5
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 9.7e-41 170.2 121 68.6
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 1.7e-40 169.5 120 65.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.7e-40 169.5 120 65.8
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 1.7e-40 169.5 121 64.5
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.7e-40 169.5 120 64.2
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.7e-40 169.5 121 65.3
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 2.2e-40 169.1 123 62.6
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.2e-40 169.1 120 64.2
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 2.2e-40 169.1 120 64.2
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.7e-40 168.3 121 64.5
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 4.8e-40 167.9 92 91.3
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 6.3e-40 167.5 121 63.6
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.1e-39 166.8 121 62.8
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.1e-39 166.8 121 63.6
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 3.1e-39 165.2 120 65.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 3.1e-39 165.2 121 63.6
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.1e-39 164.9 124 62.9
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 9.1e-39 163.7 121 63.6
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.2e-38 163.3 120 64.2
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 1.2e-38 163.3 120 62.5
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.0e-38 162.5 121 62.0
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 7.7e-38 160.6 120 62.5
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.3e-37 159.8 106 67.9
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 1.3e-37 159.8 120 62.5
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 3.8e-37 158.3 121 61.2
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 3.8e-37 158.3 120 63.3
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 6.5e-37 157.5 124 58.9
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.1e-36 156.8 118 61.9
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 4.2e-36 154.8 121 61.2
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 7.2e-36 154.1 120 61.7
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 7.2e-36 154.1 124 58.1
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 2.7e-35 152.1 124 60.5
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.0e-34 148.7 120 62.5
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.5e-33 146.4 121 60.3
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 2.0e-33 146.0 117 57.3
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 4.4e-33 144.8 121 58.7
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 5.7e-33 144.4 143 51.0
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.4e-31 139.0 121 55.4
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 4.1e-31 138.3 120 56.7
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.2e-27 126.7 110 56.4
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 1.4e-26 123.2 121 48.8
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.3e-26 122.5 110 55.5
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.8e-23 112.8 66 86.4
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 2.0e-22 109.4 146 47.3
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 8.5e-21 104.0 113 44.2
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 2.1e-19 99.4 113 45.1
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 1.6e-14 83.2 59 59.3
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 9.4e-12 73.9 51 64.7
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 3.6e-11 72.0 45 71.1
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 3.0e-10 68.9 51 56.9
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 1.5e-09 66.6 70 51.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.0e-09 66.2 45 68.9
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 6.3e-08 61.2 46 60.9
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.4e-07 60.1 93 44.1
BcaB04g18277 Brassica carinata HOM05D001003 ORTHO05D002734 9.2e-07 57.4 37 83.8


User provided reference genes

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