Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0425_0010 Schrenkiella parvula HOM05D003205 ORTHO05D003746 4.2e-96 354.8 186 100.0
Sp6g12580 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.1e-83 313.5 188 91.0
SpUn0015_0050 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.1e-83 313.5 188 91.0
SpUn0039_0040 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.1e-83 313.5 188 91.0
Thhalv10013133m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 1.4e-67 260.0 196 74.5
Carub.0008s1053 Capsella rubella HOM05D003205 ORTHO05D003746 3.6e-63 245.4 200 71.0
AL8G24652 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 3.0e-62 242.3 198 72.2
AT5G50420 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 3.1e-59 232.3 198 69.7
A02p12780 Brassica napus HOM05D003205 ORTHO05D003746 1.8e-54 216.5 179 73.7
BraA02t06335Z Brassica rapa HOM05D003205 ORTHO05D003746 1.8e-54 216.5 179 73.7
BolC2t08224H Brassica oleracea HOM05D003205 ORTHO05D003746 3.1e-51 205.7 180 70.6
C02p20840 Brassica napus HOM05D003205 ORTHO05D003746 6.5e-49 198.0 178 68.5
BcaC03g14650 Brassica carinata HOM05D003205 ORTHO05D003746 7.2e-48 194.5 179 67.6
AL1G29520 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 8.0e-47 191.0 208 57.7
CARHR017860 Cardamine hirsuta HOM05D003205 ORTHO05D003746 1.0e-46 190.7 208 55.8
Aa31LG7G2080 Aethionema arabicum HOM05D003205 ORTHO05D003746 3.0e-46 189.1 212 55.2
Sp1g15400 Schrenkiella parvula HOM05D003205 ORTHO05D003746 3.3e-45 185.7 216 54.2
Carub.0001s1703 Capsella rubella HOM05D003205 ORTHO05D003746 1.3e-44 183.7 210 55.2
AT1G17270 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 1.0e-41 174.1 200 56.5
C08p17800 Brassica napus HOM05D003205 ORTHO05D003746 4.8e-36 155.2 186 54.3
BolC8t49406H Brassica oleracea HOM05D003205 ORTHO05D003746 4.8e-36 155.2 186 54.3
Thhalv10007186m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 1.1e-35 154.1 214 48.6
BcaC07g38841 Brassica carinata HOM05D003205 ORTHO05D003746 4.1e-35 152.1 185 53.5
Cpa.g.sc25.202 Carica papaya HOM05D003205 ORTHO05D003746 5.3e-35 151.8 218 45.0
BcaC07g38843 Brassica carinata HOM05D003205 ORTHO05D003746 3.5e-34 149.1 185 53.0
THA.LOC104812278 Tarenaya hassleriana HOM05D003205 ORTHO05D003746 5.9e-34 148.3 172 51.7
BcaB03g13009 Brassica carinata HOM05D003205 ORTHO05D003746 2.7e-31 139.4 189 51.3
BcaB05g24050 Brassica carinata HOM05D003205 ORTHO05D003746 2.7e-31 139.4 147 62.6
Thecc.06G131300 Theobroma cacao HOM05D003205 ORTHO05D003746 8.0e-31 137.9 195 46.7
Duzib235G1024 Durio zibethinus HOM05D003205 ORTHO05D003746 1.0e-30 137.5 195 45.6
Gohir.D06G148300 Gossypium hirsutum HOM05D003205 ORTHO05D003746 5.2e-30 135.2 208 44.7
Gorai.010G172800 Gossypium raimondii HOM05D003205 ORTHO05D003746 6.8e-30 134.8 208 44.2
Duzib192G1026 Durio zibethinus HOM05D003205 ORTHO05D003746 1.2e-29 134.0 195 46.7
Gohir.A06G142600 Gossypium hirsutum HOM05D003205 ORTHO05D003746 3.4e-29 132.5 208 44.2
COL.COLO4_30879 Corchorus olitorius HOM05D003205 ORTHO05D003746 5.4e-27 125.2 195 43.6
BraA08t35029Z Brassica rapa HOM05D003205 ORTHO05D003746 2.0e-26 123.2 176 49.4
Lalb_Chr10g0101071 Lupinus albus HOM05D003205 ORTHO05D003746 5.9e-26 121.7 188 44.1
PGR102G1671 Punica granatum HOM05D003205 ORTHO05D003746 5.9e-26 121.7 208 42.3
A08p31000 Brassica napus HOM05D003205 ORTHO05D003746 2.3e-25 119.8 175 49.1
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 1.9e-24 116.7 204 44.1
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.9e-24 116.7 204 43.6
arahy.Tifrunner.gnm1.ann1.K9Y76V Arachis hypogaea HOM05D003205 ORTHO05D003746 2.1e-23 113.2 190 43.7
Nitab4.5_0010570g0030 Nicotiana tabacum HOM05D003205 ORTHO05D003746 2.8e-23 112.8 202 38.6
arahy.Tifrunner.gnm1.ann1.42RYK8 Arachis hypogaea HOM05D003205 ORTHO05D003746 4.7e-23 112.1 190 43.2
Sabra03G0044100 Salix brachista HOM05D003205 ORTHO05D003746 4.7e-23 112.1 199 42.2
Atru.chr1.4171 Acer truncatum HOM05D003205 ORTHO05D003746 1.4e-22 110.5 191 41.9
Ca_23465_v3 Cicer arietinum L. HOM05D003205 ORTHO05D003746 1.4e-22 110.5 193 42.5
Nitab4.5_0006338g0030 Nicotiana tabacum HOM05D003205 ORTHO05D003746 2.3e-22 109.8 195 39.0
Cfa003454 Carpinus fangiana HOM05D003205 ORTHO05D003746 5.2e-22 108.6 204 42.6
Psat4g164760 Pisum sativum HOM05D003205 ORTHO05D003746 5.2e-22 108.6 191 42.4
TWI23G1304 Tripterygium wilfordii HOM05D003205 ORTHO05D003746 6.8e-22 108.2 220 39.5
Ciclev10025289m.g Citrus clementina HOM05D003205 ORTHO05D003746 8.9e-22 107.8 199 39.2
Oeu019512.1 Olea europaea HOM05D003205 ORTHO05D003746 8.9e-22 107.8 213 38.0
Nitab4.5_0006190g0010 Nicotiana tabacum HOM05D003205 ORTHO05D003746 1.5e-21 107.1 198 38.9
Nitab4.5_0006966g0020 Nicotiana tabacum HOM05D003205 ORTHO05D003746 1.5e-21 107.1 202 38.1
Rhsim08G0245500 Rhododendron simsii HOM05D003205 ORTHO05D003746 4.4e-21 105.5 204 39.2
TWI59G0476 Tripterygium wilfordii HOM05D003205 ORTHO05D003746 4.4e-21 105.5 228 37.7
Eucgr.I02168 Eucalyptus grandis HOM05D003205 ORTHO05D003746 1.7e-20 103.6 240 35.4
Eucgr.J02587 Eucalyptus grandis HOM05D003205 ORTHO05D003746 2.2e-20 103.2 217 36.9
Lalb_Chr04g0253981 Lupinus albus HOM05D003205 ORTHO05D003746 2.8e-20 102.8 152 44.7
ClCG11G011670 Citrullus lanatus HOM05D003205 ORTHO05D003746 8.3e-20 101.3 186 39.2
Gorai.011G054400 Gossypium raimondii HOM05D003205 ORTHO05D003746 1.1e-19 100.9 194 35.1
SGA_v2.0_scaffold71G23945 Striga asiatica HOM05D003205 ORTHO05D003746 1.1e-19 100.9 198 38.9
CAN.G790.51 Capsicum annuum HOM05D003205 ORTHO05D003746 1.8e-19 100.1 211 36.0
Lj6g0020924 Lotus japonicus HOM05D003205 ORTHO05D003746 1.8e-19 100.1 151 43.7
Glyma.16G014800 Glycine max HOM05D003205 ORTHO05D003746 2.4e-19 99.8 149 43.6
vmacro18715 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 2.4e-19 99.8 147 43.5
Glyma.07G046500 Glycine max HOM05D003205 ORTHO05D003746 3.1e-19 99.4 150 43.3
Gohir.D10G050700 Gossypium hirsutum HOM05D003205 ORTHO05D003746 3.1e-19 99.4 194 34.5
Actinidia24417 Actinidia chinensis HOM05D003205 ORTHO05D003746 4.1e-19 99.0 241 34.9
ClCG07G014230 Citrullus lanatus HOM05D003205 ORTHO05D003746 7.0e-19 98.2 205 38.5
Gohir.A10G050100 Gossypium hirsutum HOM05D003205 ORTHO05D003746 7.0e-19 98.2 194 35.6
MELO3C026659.2 Cucumis melo HOM05D003205 ORTHO05D003746 9.2e-19 97.8 202 38.6
Migut.I01142 Erythranthe guttata HOM05D003205 ORTHO05D003746 9.2e-19 97.8 201 39.3
FvH4_6g36080 Fragaria vesca HOM05D003205 ORTHO05D003746 9.2e-19 97.8 186 39.8
Medtr8g023490 Medicago truncatula HOM05D003205 ORTHO05D003746 9.2e-19 97.8 190 38.4
CsaV3_3G031120 Cucumis sativus L. HOM05D003205 ORTHO05D003746 1.2e-18 97.4 202 38.6
FAN05G2402 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.2e-18 97.4 185 39.5
Peaxi162Scf00038g02329 Petunia axillaris HOM05D003205 ORTHO05D003746 1.2e-18 97.4 187 39.0
Solyc03g123720.4 Solanum lycopersicum HOM05D003205 ORTHO05D003746 1.2e-18 97.4 208 35.1
Sopen03g041490 Solanum pennellii HOM05D003205 ORTHO05D003746 1.2e-18 97.4 208 35.1
PGSC0003DMG400009153 Solanum tuberosum HOM05D003205 ORTHO05D003746 1.2e-18 97.4 211 35.1
TPR.G26460 Trifolium pratense HOM05D003205 ORTHO05D003746 1.2e-18 97.4 140 44.3
FAN09G0286 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.6e-18 97.1 190 38.9
FAN14G3383 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.6e-18 97.1 190 38.9
CANSAT56G3228 Cannabis sativa HOM05D003205 ORTHO05D003746 2.0e-18 96.7 212 39.2
VMungo0251G1316 Vigna mungo HOM05D003205 ORTHO05D003746 2.0e-18 96.7 188 38.8
Hma1.2p1_0090F.1_g045700 Hydrangea macrophylla HOM05D003205 ORTHO05D003746 2.7e-18 96.3 214 36.0
CiPaw.01G210700 Carya illinoinensis HOM05D003205 ORTHO05D003746 3.5e-18 95.9 198 39.9
FAN14G4277 Fragaria x ananassa HOM05D003205 ORTHO05D003746 3.5e-18 95.9 182 39.6
SalBow6G2264 Salvia bowleyana HOM05D003205 ORTHO05D003746 3.5e-18 95.9 214 36.4
Dinv37815 Davidia involucrata HOM05D003205 ORTHO05D003746 4.5e-18 95.5 204 36.8
Lj9A539T87 Lonicera japonica HOM05D003205 ORTHO05D003746 4.5e-18 95.5 209 34.0
Sed0004077 Sechium edule HOM05D003205 ORTHO05D003746 4.5e-18 95.5 194 40.2
Sed0013389 Sechium edule HOM05D003205 ORTHO05D003746 4.5e-18 95.5 210 35.7
Lj5A28T48 Lonicera japonica HOM05D003205 ORTHO05D003746 5.9e-18 95.1 197 37.1
Dinv20375 Davidia involucrata HOM05D003205 ORTHO05D003746 7.8e-18 94.7 225 35.6
Actinidia21844 Actinidia chinensis HOM05D003205 ORTHO05D003746 1.3e-17 94.0 226 33.6
Phvul.010G122400 Phaseolus vulgaris HOM05D003205 ORTHO05D003746 1.3e-17 94.0 191 36.6
CSS0017118 Camellia sinensis var. sinensis HOM05D003205 ORTHO05D003746 1.7e-17 93.6 198 36.4
BcaB05g24051 Brassica carinata HOM05D003205 ORTHO05D003746 2.3e-17 93.2 134 49.3
AT1G53770 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 3.9e-17 92.4 181 38.1
arahy.Tifrunner.gnm1.ann1.228WZM Arachis hypogaea HOM05D003205 ORTHO05D003746 3.9e-17 92.4 146 44.5
Lsat_1_v5_gn_4_89601 Lactuca sativa HOM05D003205 ORTHO05D003746 3.9e-17 92.4 201 36.8
RcHm_v2.0_Chr2g0148131 Rosa chinensis HOM05D003205 ORTHO05D003746 3.9e-17 92.4 179 36.9
THA.LOC104822610 Tarenaya hassleriana HOM05D003205 ORTHO05D003746 3.9e-17 92.4 191 37.7
MELO3C003961.2 Cucumis melo HOM05D003205 ORTHO05D003746 6.6e-17 91.7 184 39.1
Potri.003G073500 Populus trichocarpa HOM05D003205 ORTHO05D003746 6.6e-17 91.7 197 38.6
arahy.Tifrunner.gnm1.ann1.UC07MD Arachis hypogaea HOM05D003205 ORTHO05D003746 8.6e-17 91.3 146 43.8
FAN02G2685 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.5e-16 90.5 174 39.1
PSO675G6030 Papaver somniferum HOM05D003205 ORTHO05D003746 1.5e-16 90.5 207 36.2
Rhsim12G0213400 Rhododendron simsii HOM05D003205 ORTHO05D003746 1.5e-16 90.5 201 36.8
Oeu006758.2 Olea europaea HOM05D003205 ORTHO05D003746 3.3e-16 89.4 197 40.6
TAR629G0617 Trochodendron aralioides HOM05D003205 ORTHO05D003746 3.3e-16 89.4 220 34.5
arahy.Tifrunner.gnm1.ann1.YFI140 Arachis hypogaea HOM05D003205 ORTHO05D003746 7.3e-16 88.2 117 47.0
CARHR044080 Cardamine hirsuta HOM05D003205 ORTHO05D003746 9.5e-16 87.8 184 38.6
MSTRG.22513 Avicennia marina HOM05D003205 ORTHO05D003746 1.2e-15 87.4 219 32.4
Prupe.3G030300 Prunus persica HOM05D003205 ORTHO05D003746 1.2e-15 87.4 132 41.7
arahy.Tifrunner.gnm1.ann1.N9CMJR Arachis hypogaea HOM05D003205 ORTHO05D003746 1.6e-15 87.0 117 46.2
AL1G62460 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 2.1e-15 86.7 184 36.4
Carub.0001s4304 Capsella rubella HOM05D003205 ORTHO05D003746 2.1e-15 86.7 182 36.8
Manes.11G011700 Manihot esculenta HOM05D003205 ORTHO05D003746 3.6e-15 85.9 137 40.9
MD17G1155100 Malus domestica HOM05D003205 ORTHO05D003746 1.0e-14 84.3 144 41.0
QL05p000971 Quercus lobata HOM05D003205 ORTHO05D003746 1.0e-14 84.3 154 39.6
Aa31LG10G1520 Aethionema arabicum HOM05D003205 ORTHO05D003746 1.4e-14 84.0 170 35.3
PSO675G7039 Papaver somniferum HOM05D003205 ORTHO05D003746 3.1e-14 82.8 198 36.9
Aqoxy7G00922 Aquilegia oxysepala HOM05D003205 ORTHO05D003746 8.9e-14 81.3 216 30.6
MD09G1171900 Malus domestica HOM05D003205 ORTHO05D003746 2.0e-13 80.1 147 38.1
CDE07G0121 Ceratophyllum demersum HOM05D003205 ORTHO05D003746 3.4e-13 79.3 217 32.3
Thhalv10011359m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 3.4e-13 79.3 189 34.4
CsaV3_2G008800 Cucumis sativus L. HOM05D003205 ORTHO05D003746 5.8e-13 78.6 92 50.0
Sp1g40290 Schrenkiella parvula HOM05D003205 ORTHO05D003746 7.5e-13 78.2 185 35.1
Hma1.2p1_1999F.1_g310510 Hydrangea macrophylla HOM05D003205 ORTHO05D003746 1.3e-12 77.4 246 31.7
CAN.G1633.1 Capsicum annuum HOM05D003205 ORTHO05D003746 3.7e-12 75.9 203 32.0
Nn6g35748 Nelumbo nucifera HOM05D003205 ORTHO05D003746 3.7e-12 75.9 227 31.7
HPP92_026494 Vanilla planifolia HOM05D003205 ORTHO05D003746 1.9e-11 73.6 207 31.4
Zm00001eb107370 Zea mays HOM05D003205 ORTHO05D003746 2.4e-11 73.2 206 31.1
DCAR_022637 Daucus carota HOM05D003205 ORTHO05D003746 4.1e-11 72.4 161 36.0
BcaC08g43556 Brassica carinata HOM05D003205 ORTHO05D003746 5.4e-11 72.0 141 37.6
BraA06t23312Z Brassica rapa HOM05D003205 ORTHO05D003746 7.0e-11 71.6 132 37.9
C06p09550 Brassica napus HOM05D003205 ORTHO05D003746 9.2e-11 71.2 132 39.4
BolC6t36029H Brassica oleracea HOM05D003205 ORTHO05D003746 9.2e-11 71.2 132 39.4
Lalb_Chr15g0076651 Lupinus albus HOM05D003205 ORTHO05D003746 9.2e-11 71.2 171 40.4
Actinidia25998 Actinidia chinensis HOM05D003205 ORTHO05D003746 1.2e-10 70.9 134 38.1
A06p00780 Brassica napus HOM05D003205 ORTHO05D003746 1.6e-10 70.5 132 37.9
BcaB07g33302 Brassica carinata HOM05D003205 ORTHO05D003746 2.7e-10 69.7 122 40.2
EL10Ac7g18249 Beta vulgaris HOM05D003205 ORTHO05D003746 3.5e-10 69.3 194 34.0
Ah.08g217420 Amaranthus hybridus HOM05D003205 ORTHO05D003746 7.8e-10 68.2 190 33.7
AUR62001394 Chenopodium quinoa HOM05D003205 ORTHO05D003746 1.0e-09 67.8 218 32.6
AUR62025609 Chenopodium quinoa HOM05D003205 ORTHO05D003746 1.0e-09 67.8 195 34.4
PSO017G4350 Papaver somniferum HOM05D003205 ORTHO05D003746 1.0e-09 67.8 104 42.3
HanXRQChr09g0277291 Helianthus annuus HOM05D003205 ORTHO05D003746 3.0e-09 66.2 153 37.9
Os07g0572600 Oryza sativa ssp. japonica HOM05D003205 ORTHO05D003746 3.0e-09 66.2 205 32.2
Phvul.009G261000 Phaseolus vulgaris HOM05D003205 ORTHO05D003746 3.9e-09 65.9 167 38.3
AL6G13440 Arabidopsis lyrata HOM05D003205 ORTHO05D079353 1.5e-08 63.9 70 58.6
SGA_v2.0_scaffold68G22825 Striga asiatica HOM05D003205 ORTHO05D003746 1.5e-08 63.9 205 29.8
Hund18628 Selenicereus undatus HOM05D003205 ORTHO05D003746 1.9e-08 63.5 236 30.1
PGSC0003DMG400004868 Solanum tuberosum HOM05D003205 ORTHO05D003746 1.9e-08 63.5 108 40.7
Solyc06g063120.4 Solanum lycopersicum HOM05D003205 ORTHO05D003746 2.5e-08 63.2 210 30.0
Sopen06g022570 Solanum pennellii HOM05D003205 ORTHO05D003746 5.6e-08 62.0 210 30.0
Gohir.A09G076000 Gossypium hirsutum HOM05D003205 ORTHO05D003746 9.5e-08 61.2 201 30.3
VMungo1309G3118 Vigna mungo HOM05D003205 ORTHO05D003746 1.2e-07 60.8 159 36.5
Gohir.D09G075700 Gossypium hirsutum HOM05D003205 ORTHO05D003746 3.6e-07 59.3 201 29.9
Sc12g0011020 Simmondsia chinensis HOM05D003205 ORTHO05D003746 4.7e-07 58.9 210 30.0
ATR0053G062 Amborella trichopoda HOM05D003205 ORTHO05D003746 6.2e-07 58.5 224 28.6
MSTRG.26363 Avicennia marina HOM05D003205 ORTHO05D003746 6.2e-07 58.5 109 37.6
Gorai.006G090800 Gossypium raimondii HOM05D003205 ORTHO05D003746 1.1e-06 57.8 164 31.1
SHI25231 Sapria himalayana HOM05D003205 ORTHO05D003746 1.1e-06 57.8 194 31.4
vmacro17068 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 4.0e-06 55.8 83 39.8
vmacro22011 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 4.0e-06 55.8 83 39.8


User provided reference genes

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