Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.6e-197 691.0 351 100.0
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.3e-170 603.2 345 87.8
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 6.5e-167 590.9 351 86.6
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 5.5e-166 587.8 351 86.0
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 6.1e-165 584.3 351 86.0
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 6.1e-165 584.3 351 86.0
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-157 559.7 341 84.5
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.4e-153 546.6 351 79.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 4.2e-142 508.4 350 75.4
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.1e-100 370.9 275 72.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.6e-96 357.1 348 52.3
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.2e-88 330.9 336 57.4
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 7.9e-88 328.2 370 47.6
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-86 324.3 349 49.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 9.6e-86 321.2 212 78.3
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 9.6e-86 321.2 212 78.3
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 6.2e-85 318.5 352 47.2
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.5e-83 312.4 375 45.6
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.5e-83 312.4 340 49.1
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.5e-81 306.6 192 83.3
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.8e-77 293.1 332 47.3
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 9.0e-76 288.1 426 40.1
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.5e-75 287.3 330 45.5
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 7.6e-75 285.0 331 45.6
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 2.9e-74 283.1 334 46.1
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.8e-74 282.7 355 46.8
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 8.4e-74 281.6 354 46.6
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.1e-73 281.2 329 46.2
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.2e-73 279.6 375 44.8
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 8.7e-71 271.6 405 40.0
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.1e-70 271.2 139 98.6
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 7.4e-70 268.5 342 44.2
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.3e-69 267.7 299 47.8
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.2e-69 266.9 371 41.5
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 6.3e-69 265.4 340 43.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.1e-68 264.6 396 41.2
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.4e-68 264.2 359 43.5
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.8e-68 263.8 359 41.8
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.1e-68 262.7 151 84.8
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 6.9e-68 261.9 402 39.6
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 7.7e-67 258.5 395 39.7
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.7e-66 257.3 378 40.5
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.9e-66 256.5 440 35.9
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 8.5e-66 255.0 194 69.6
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 4.2e-65 252.7 366 42.1
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.6e-64 250.8 289 50.9
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.6e-64 250.8 441 36.7
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.6e-64 249.6 416 37.3
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 7.9e-64 248.4 270 48.5
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.1e-63 245.7 273 49.8
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.1e-62 244.6 411 35.8
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.1e-62 244.6 418 35.6
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 2.5e-62 243.4 445 34.6
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 3.3e-62 243.0 411 35.8
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 5.7e-62 242.3 448 34.8
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 9.7e-62 241.5 404 35.9
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 9.7e-62 241.5 404 35.9
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.3e-61 241.1 440 35.7
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.3e-61 241.1 409 35.2
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.2e-61 240.4 451 35.3
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.2e-61 240.4 259 48.6
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-60 238.0 401 37.9
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.4e-60 237.7 413 34.6
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 3.1e-60 236.5 397 39.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.3e-60 235.7 408 38.0
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.3e-60 235.7 282 48.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 9.1e-60 235.0 417 37.2
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 9.1e-60 235.0 435 35.2
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.2e-59 234.6 412 35.2
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.5e-59 234.2 446 35.7
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 4.5e-59 232.6 317 42.9
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 5.9e-59 232.3 270 47.4
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 3.8e-58 229.6 430 33.0
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 6.5e-58 228.8 432 34.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.1e-57 228.0 435 34.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.9e-57 227.3 436 34.6
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 3.2e-57 226.5 411 34.5
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 4.2e-57 226.1 296 45.9
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.2e-57 226.1 440 33.4
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 7.2e-57 225.3 341 38.7
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 9.4e-57 224.9 426 35.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.2e-56 224.6 484 32.6
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.7e-56 223.4 436 34.9
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.6e-56 223.0 436 34.4
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.7e-56 222.6 365 38.4
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.1e-56 222.2 259 44.8
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.4e-55 221.1 297 43.4
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.8e-55 220.7 429 34.0
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.0e-55 219.9 445 34.2
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 3.0e-55 219.9 457 33.0
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.1e-54 218.0 371 38.0
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.1e-54 218.0 323 42.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.1e-54 218.0 334 39.8
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 3.3e-54 216.5 260 51.5
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 3.3e-54 216.5 259 45.2
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 4.4e-54 216.1 347 38.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.8e-52 210.7 458 32.3
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 2.4e-52 210.3 407 34.9
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.6e-51 206.8 440 34.8
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.5e-51 206.1 282 42.6
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-50 204.5 318 41.8
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.3e-50 204.5 443 32.3
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.7e-50 204.1 269 43.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.2e-50 203.8 233 45.9
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 2.5e-49 200.3 466 32.2
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 9.4e-49 198.4 418 33.5
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.6e-48 197.6 273 44.0
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 3.6e-48 196.4 346 37.9
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.1e-48 195.7 313 41.2
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 8.0e-48 195.3 423 32.2
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.0e-47 194.9 453 31.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 9.7e-46 188.3 470 31.1
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 4.8e-45 186.0 437 33.4
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.6e-43 180.3 452 31.6
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.9e-42 176.8 135 67.4
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.5e-42 175.3 257 40.1
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 8.5e-42 175.3 135 66.7
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.9e-41 174.1 296 38.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 7.2e-41 172.2 289 40.1
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.2e-41 172.2 257 40.1
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 9.4e-41 171.8 466 30.7
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 2.0e-38 164.1 377 32.9
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 3.1e-36 156.8 203 44.3
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-33 147.9 385 29.4
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-32 144.1 222 37.8
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 4.7e-32 142.9 384 30.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 3.4e-30 136.7 303 33.3
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 1.8e-28 131.0 125 56.8
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 3.5e-27 126.7 157 35.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 8.0e-24 115.5 222 35.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.0e-23 113.6 188 39.4
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 6.8e-23 112.5 143 37.8
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 6.8e-23 112.5 158 38.6
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.2e-19 101.7 201 30.8
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-17 95.1 153 34.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.5e-17 94.0 109 48.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 9.5e-17 92.0 97 37.1
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.1e-16 90.9 121 34.7
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 4.7e-16 89.7 231 31.2
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 8.0e-16 89.0 105 41.9
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.0e-16 89.0 139 40.3
BcaB04g17137 Brassica carinata HOM05D005167 ORTHO05D006312 3.4e-14 83.6 57 78.9
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 7.8e-11 72.4 103 38.8
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.3e-10 70.9 114 37.7
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.3e-09 66.6 232 26.3


User provided reference genes

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