Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 8.6e-87 323.6 155 100.0
SpUn0839_0010 Schrenkiella parvula HOM05D002915 ORTHO05D003004 3.3e-54 215.3 101 99.0
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 7.3e-46 187.6 331 37.5
A07p34150 Brassica napus HOM05D002915 ORTHO05D003004 7.8e-40 167.5 96 78.1
BolC6t39177H Brassica oleracea HOM05D002915 ORTHO05D003004 3.3e-38 162.2 96 76.0
BcaB03g15181 Brassica carinata HOM05D002915 ORTHO05D003004 7.3e-38 161.0 96 76.0
BcaC08g46172 Brassica carinata HOM05D002915 ORTHO05D003004 9.6e-38 160.6 96 75.0
C06p42620 Brassica napus HOM05D002915 ORTHO05D003004 9.6e-38 160.6 96 75.0
CARHR060200 Cardamine hirsuta HOM05D002915 ORTHO05D003004 9.9e-35 150.6 101 68.3
Thhalv10019642m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 9.9e-35 150.6 82 84.1
AL2G26290 Arabidopsis lyrata HOM05D002915 ORTHO05D003004 1.1e-28 130.6 102 62.7
Carub.0002s1396 Capsella rubella HOM05D002915 ORTHO05D003004 4.0e-28 128.6 128 53.9
Sp5g30010 Schrenkiella parvula HOM05D002915 ORTHO05D003004 1.3e-26 123.6 104 56.7
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 1.7e-26 123.2 109 56.0
Carub.0002s2166 Capsella rubella HOM05D002915 ORTHO05D003004 3.9e-23 112.1 130 46.2
AT1G74875 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 1.9e-22 109.8 131 47.3
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 1.4e-20 103.6 56 92.9
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 3.1e-20 102.4 56 91.1
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 3.1e-20 102.4 56 91.1
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 3.1e-20 102.4 56 91.1
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 2.0e-19 99.8 56 87.5
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 4.5e-19 98.6 55 90.9
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.0e-18 97.4 56 87.5
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 1.2e-16 90.5 102 44.1
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 1.3e-15 87.0 55 80.0
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 2.3e-15 86.3 51 78.4
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 1.1e-14 84.0 55 76.4
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 1.1e-14 84.0 56 80.4
AT1G67623 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 7.4e-14 81.3 96 44.8
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 2.4e-12 76.3 55 70.9
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 5.3e-12 75.1 55 70.9
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 7.7e-11 71.2 48 68.8
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 1.3e-10 70.5 55 63.6
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 2.9e-10 69.3 51 66.7
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 5.0e-10 68.6 48 62.5
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 6.5e-10 68.2 50 68.0
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 1.1e-09 67.4 49 65.3
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.4e-09 67.0 54 61.1
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 1.9e-09 66.6 54 66.7
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 1.9e-09 66.6 56 55.4
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 2.5e-09 66.2 55 58.2
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 3.2e-09 65.9 50 64.0
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 5.5e-09 65.1 48 62.5
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 5.5e-09 65.1 53 58.5
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 5.5e-09 65.1 55 61.8
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 1.2e-08 63.9 51 60.8
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 1.6e-08 63.5 55 61.8
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 1.6e-08 63.5 55 58.2
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 1.6e-08 63.5 50 62.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 2.7e-08 62.8 50 60.0
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 2.7e-08 62.8 57 57.9
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.7e-08 62.8 54 57.4
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.7e-08 62.8 54 57.4
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.7e-08 62.8 55 58.2
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 2.7e-08 62.8 54 59.3
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 2.7e-08 62.8 54 59.3
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 3.6e-08 62.4 55 56.4
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 3.6e-08 62.4 50 64.0
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 3.6e-08 62.4 51 62.7
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 3.6e-08 62.4 55 56.4
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 3.6e-08 62.4 51 58.8
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 3.6e-08 62.4 48 64.6
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 4.6e-08 62.0 50 64.0
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 4.6e-08 62.0 55 54.5
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 6.1e-08 61.6 51 60.8
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 7.9e-08 61.2 53 56.6
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 7.9e-08 61.2 58 56.9
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 1.0e-07 60.8 50 64.0
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 1.0e-07 60.8 56 58.9
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 1.0e-07 60.8 50 64.0
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.4e-07 60.5 55 54.5
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 1.4e-07 60.5 50 62.0
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 1.4e-07 60.5 56 50.0
CARHR060390 Cardamine hirsuta HOM05D002915 ORTHO05D003004 1.8e-07 60.1 99 35.4
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 1.8e-07 60.1 50 62.0
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 1.8e-07 60.1 55 54.5
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 3.9e-07 58.9 56 57.1
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 3.9e-07 58.9 48 62.5
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 5.1e-07 58.5 50 60.0
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 6.7e-07 58.2 52 57.7
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 6.7e-07 58.2 53 56.6
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 6.7e-07 58.2 52 51.9
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 6.7e-07 58.2 50 58.0
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 8.8e-07 57.8 50 58.0
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 1.1e-06 57.4 51 58.8
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 1.1e-06 57.4 51 58.8
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 1.1e-06 57.4 50 58.0
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 1.5e-06 57.0 48 60.4
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.5e-06 57.0 50 58.0
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 2.0e-06 56.6 55 49.1
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 2.5e-06 56.2 53 52.8
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 3.3e-06 55.8 48 56.2
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 5.7e-06 55.1 50 58.0
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 7.4e-06 54.7 49 57.1
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 9.7e-06 54.3 55 54.5


User provided reference genes

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