Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 8.7e-77 291.2 287 100.0
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 6.7e-61 238.4 288 79.9
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 6.7e-61 238.4 288 79.9
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 1.8e-53 213.8 292 67.8
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 5.1e-53 212.2 290 82.4
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 5.7e-52 208.8 288 78.5
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 2.7e-46 189.9 288 79.5
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.4e-45 187.6 289 75.8
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.8e-43 179.9 291 74.6
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 6.3e-43 178.7 288 75.3
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.8e-42 177.2 288 76.0
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 3.1e-42 176.4 291 75.9
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 3.1e-42 176.4 291 75.9
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 1.7e-40 170.6 291 75.3
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-39 166.8 291 73.5
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 7.0e-34 148.7 296 60.8
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 2.2e-27 127.1 286 62.6
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 6.3e-27 125.6 261 63.6
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 8.3e-27 125.2 236 73.3
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.4e-26 123.6 236 70.3
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 2.4e-26 123.6 242 65.7
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.1e-26 123.2 288 62.8
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 5.4e-26 122.5 229 68.6
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 9.1e-26 121.7 249 67.5
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 9.1e-26 121.7 252 59.1
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.6e-25 120.9 231 69.3
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.0e-24 118.2 252 57.1
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.7e-24 117.5 251 68.5
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.7e-24 117.5 251 68.5
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 3.8e-24 116.3 238 66.4
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-23 113.6 247 68.0
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 2.5e-23 113.6 240 69.2
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 2.3e-21 107.1 253 58.9
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 2.3e-21 107.1 239 60.3
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 4.0e-21 106.3 187 64.2
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 8.9e-21 105.1 221 64.3
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.2e-20 104.8 256 51.2
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.5e-20 104.4 225 65.3
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.5e-20 104.4 252 65.5
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 1.5e-20 104.4 229 63.8
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.0e-20 104.0 245 67.8
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 2.0e-20 104.0 246 61.4
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 3.4e-20 103.2 229 63.8
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 4.4e-20 102.8 245 48.6
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 5.7e-20 102.4 198 78.8
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 5.7e-20 102.4 252 58.7
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 9.8e-20 101.7 237 61.6
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 9.8e-20 101.7 252 58.3
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 2.8e-19 100.1 256 57.4
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.8e-19 100.1 274 55.5
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.8e-19 100.1 256 54.7
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 2.8e-19 100.1 243 59.3
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 3.7e-19 99.8 251 61.4
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 4.9e-19 99.4 230 54.3
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.3e-19 99.0 236 67.4
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 6.3e-19 99.0 240 69.2
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.1e-18 98.2 240 46.2
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 1.4e-18 97.8 234 41.9
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.8e-18 97.4 242 66.1
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.8e-18 97.4 236 66.5
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 2.4e-18 97.1 256 57.0
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.4e-18 97.1 256 53.5
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 2.4e-18 97.1 229 60.7
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.2e-18 96.7 236 65.3
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.2e-18 96.7 236 69.5
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.2e-18 96.7 229 69.0
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 4.1e-18 96.3 229 64.2
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 7.0e-18 95.5 229 52.4
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.2e-17 94.7 242 66.5
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.2e-17 94.7 247 66.4
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.6e-17 94.4 254 61.8
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.0e-17 94.0 236 65.3
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 2.7e-17 93.6 230 60.4
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 2.7e-17 93.6 229 68.6
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.5e-17 93.2 236 60.2
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.5e-17 93.2 236 60.6
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 3.5e-17 93.2 236 68.2
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.5e-17 92.8 236 61.0
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 4.5e-17 92.8 236 65.3
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 5.9e-17 92.4 257 53.3
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 1.0e-16 91.7 236 60.6
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.0e-16 91.7 237 63.3
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 1.0e-16 91.7 245 66.1
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.3e-16 91.3 236 69.1
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.3e-16 91.3 236 66.5
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 1.7e-16 90.9 273 54.6
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 1.7e-16 90.9 229 73.8
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 2.9e-16 90.1 256 64.1
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.9e-16 89.7 247 64.4
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.9e-16 89.7 231 60.2
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 5.0e-16 89.4 236 67.4
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 5.0e-16 89.4 260 58.8
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 5.0e-16 89.4 256 58.6
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 5.0e-16 89.4 221 71.9
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 6.6e-16 89.0 236 59.7
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 6.6e-16 89.0 236 59.7
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 6.6e-16 89.0 236 59.7
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 6.6e-16 89.0 236 59.7
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 6.6e-16 89.0 285 53.0
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 6.6e-16 89.0 234 66.7
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 8.6e-16 88.6 166 82.5
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 8.6e-16 88.6 237 65.8
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 1.1e-15 88.2 229 60.3
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 1.1e-15 88.2 232 61.2
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.1e-15 88.2 178 65.7
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 1.1e-15 88.2 242 70.2
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.1e-15 88.2 270 40.7
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.1e-15 88.2 232 67.2
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 1.5e-15 87.8 244 65.2
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.9e-15 87.4 226 60.2
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.9e-15 87.4 232 59.9
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.5e-15 87.0 236 66.5
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 2.5e-15 87.0 232 62.1
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 2.5e-15 87.0 239 59.0
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 3.3e-15 86.7 236 58.5
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 3.3e-15 86.7 240 64.6
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 4.3e-15 86.3 226 60.6
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.6e-15 85.9 236 58.9
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 7.3e-15 85.5 181 63.0
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 9.5e-15 85.1 194 61.9
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 1.2e-14 84.7 229 58.5
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 1.6e-14 84.3 253 63.2
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 2.8e-14 83.6 236 51.7
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 2.8e-14 83.6 167 84.4
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 2.8e-14 83.6 167 84.4
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 2.8e-14 83.6 167 84.4
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 2.8e-14 83.6 177 67.8
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 3.6e-14 83.2 155 63.9
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 3.6e-14 83.2 155 63.9
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.6e-14 83.2 183 63.9
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 3.6e-14 83.2 253 63.2
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 4.7e-14 82.8 259 62.9
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 6.1e-14 82.4 204 64.2
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 6.1e-14 82.4 221 62.4
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.0e-13 81.6 119 83.2
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.0e-13 81.6 255 62.0
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 1.8e-13 80.9 239 66.5
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 2.3e-13 80.5 204 63.7
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 4.0e-13 79.7 134 61.9
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 5.2e-13 79.3 221 63.3
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 5.2e-13 79.3 142 70.4
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 8.9e-13 78.6 236 61.9
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.2e-12 78.2 231 58.9
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.5e-12 77.8 239 65.7
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.0e-12 77.4 242 58.7
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 5.8e-12 75.9 204 69.1
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 7.5e-12 75.5 204 61.8
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 7.5e-12 75.5 253 64.8
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 9.8e-12 75.1 229 71.2
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 9.8e-12 75.1 229 71.2
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.7e-11 74.3 233 64.4
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 3.7e-11 73.2 167 85.0
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 1.9e-10 70.9 119 69.7
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 2.4e-10 70.5 264 57.6
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 2.4e-10 70.5 119 70.6
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.2e-10 70.1 257 59.9
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 4.6e-09 66.2 119 64.7
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.7e-08 64.3 237 68.4
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 3.9e-08 63.2 261 40.6
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.9e-07 60.8 119 55.5
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 2.5e-07 60.5 101 41.6
C06p07660 Brassica napus HOM05D003453 ORTHO05D042108 4.3e-07 59.7 61 57.4
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 7.3e-07 58.9 264 59.8
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 2.1e-06 57.4 65 50.8
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.1e-06 57.4 232 65.5
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 3.6e-06 56.6 119 76.5
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 4.7e-06 56.2 166 75.9
ClCG06G013820 Citrullus lanatus HOM05D003453 ORTHO05D004154 8.0e-06 55.5 65 52.3


User provided reference genes

Program Settings