Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0227_0010 Schrenkiella parvula HOM05D002392 ORTHO05D002491 3.2e-126 455.3 261 100.0
Thhalv10012209m.g Eutrema salsugineum HOM05D002392 ORTHO05D002491 5.4e-41 172.2 276 46.7
Sp1g40170 Schrenkiella parvula HOM05D002392 ORTHO05D002491 7.7e-40 168.3 116 76.7
A08p04070 Brassica napus HOM05D002392 ORTHO05D002491 1.9e-38 163.7 288 43.1
BcaC05g27515 Brassica carinata HOM05D002392 ORTHO05D002491 9.5e-38 161.4 187 55.6
C05p34890 Brassica napus HOM05D002392 ORTHO05D002491 9.5e-38 161.4 187 55.6
BraA08t32433Z Brassica rapa HOM05D002392 ORTHO05D002491 9.5e-38 161.4 288 42.7
C08p04250 Brassica napus HOM05D002392 ORTHO05D002491 1.6e-37 160.6 188 52.1
BcaC07g37064 Brassica carinata HOM05D002392 ORTHO05D002491 8.0e-37 158.3 196 50.5
BcaC07g37061 Brassica carinata HOM05D002392 ORTHO05D002491 1.0e-36 157.9 288 42.4
C08p04260 Brassica napus HOM05D002392 ORTHO05D002491 3.0e-36 156.4 288 42.0
BcaC07g37059 Brassica carinata HOM05D002392 ORTHO05D002491 4.0e-36 156.0 290 42.4
BolC5t32214H Brassica oleracea HOM05D002392 ORTHO05D002491 4.0e-36 156.0 185 55.1
BolC8t47229H Brassica oleracea HOM05D002392 ORTHO05D002491 5.2e-36 155.6 288 42.0
BcaC07g37060 Brassica carinata HOM05D002392 ORTHO05D002491 6.8e-36 155.2 288 42.0
A05p20680 Brassica napus HOM05D002392 ORTHO05D002491 4.9e-34 149.1 265 48.3
BraA05t20976Z Brassica rapa HOM05D002392 ORTHO05D002491 1.4e-33 147.5 265 48.3
BcaB02g11070 Brassica carinata HOM05D002392 ORTHO05D002491 8.6e-31 138.3 176 51.1
BcaB04g17348 Brassica carinata HOM05D002392 ORTHO05D002491 7.3e-30 135.2 289 40.1
BcaC05g28516 Brassica carinata HOM05D002392 ORTHO05D002491 7.3e-30 135.2 275 40.7
BcaC07g37062 Brassica carinata HOM05D002392 ORTHO05D002491 7.3e-30 135.2 172 48.8
BcaC07g37063 Brassica carinata HOM05D002392 ORTHO05D002491 7.3e-30 135.2 172 48.8
BolC8t47228H Brassica oleracea HOM05D002392 ORTHO05D002491 3.6e-29 132.9 172 48.3
AL1G56290 Arabidopsis lyrata HOM05D002392 ORTHO05D002491 6.4e-26 122.1 174 48.9
AT1G49330 Arabidopsis thaliana HOM05D002392 ORTHO05D002491 3.0e-23 113.2 174 46.6
CARHR039320 Cardamine hirsuta HOM05D002392 ORTHO05D002491 1.9e-22 110.5 179 45.8
Carub.0001s3851 Capsella rubella HOM05D002392 ORTHO05D002491 3.1e-20 103.2 298 35.9
BcaB07g33679 Brassica carinata HOM05D002392 ORTHO05D002491 4.6e-16 89.4 161 43.5
THA.LOC104798812 Tarenaya hassleriana HOM05D002392 ORTHO05D002491 5.1e-15 85.9 174 38.5
BcaC08g43132 Brassica carinata HOM05D002392 ORTHO05D002491 1.1e-14 84.7 44 81.8
C06p04070 Brassica napus HOM05D002392 ORTHO05D002491 1.1e-14 84.7 44 81.8
MD10G1078300 Malus domestica HOM05D002392 ORTHO05D002491 4.0e-12 76.3 168 35.7
THA.LOC104804728 Tarenaya hassleriana HOM05D002392 ORTHO05D002491 1.3e-10 71.2 174 33.9
Ciclev10030108m.g Citrus clementina HOM05D002392 ORTHO05D002491 1.7e-10 70.9 174 35.6
Peaxi162Scf00684g00045 Petunia axillaris HOM05D002392 ORTHO05D002491 1.7e-10 70.9 113 40.7
BolC6t35539H Brassica oleracea HOM05D002392 ORTHO05D002491 4.9e-10 69.3 37 81.1
Duzib132G0803 Durio zibethinus HOM05D002392 ORTHO05D002491 4.9e-10 69.3 177 32.8
TWI79G0671 Tripterygium wilfordii HOM05D002392 ORTHO05D002491 6.4e-10 68.9 63 54.0
Manes.17G099600 Manihot esculenta HOM05D002392 ORTHO05D002491 8.4e-10 68.6 159 33.3
Cfa005023 Carpinus fangiana HOM05D002392 ORTHO05D002491 1.9e-09 67.4 68 45.6
Duzib128G1183 Durio zibethinus HOM05D002392 ORTHO05D002491 1.9e-09 67.4 66 51.5
Thecc.05G046800 Theobroma cacao HOM05D002392 ORTHO05D002491 1.9e-09 67.4 181 34.8
Nitab4.5_0003168g0030 Nicotiana tabacum HOM05D002392 ORTHO05D002491 2.4e-09 67.0 63 52.4
FvH4_2g08460 Fragaria vesca HOM05D002392 ORTHO05D002491 4.1e-09 66.2 74 41.9
FAN24G2405 Fragaria x ananassa HOM05D002392 ORTHO05D002491 4.1e-09 66.2 74 41.9
TWI31G1363 Tripterygium wilfordii HOM05D002392 ORTHO05D002491 4.1e-09 66.2 47 59.6
Cc02_g17770 Coffea canephora HOM05D002392 ORTHO05D002491 5.4e-09 65.9 175 33.1
PGSC0003DMG400012319 Solanum tuberosum HOM05D002392 ORTHO05D002491 5.4e-09 65.9 47 59.6
CiPaw.05G062300 Carya illinoinensis HOM05D002392 ORTHO05D002491 7.1e-09 65.5 60 55.0
DCAR_003103 Daucus carota HOM05D002392 ORTHO05D002491 9.2e-09 65.1 47 57.4
Lj1g0004120 Lotus japonicus HOM05D002392 ORTHO05D002491 1.2e-08 64.7 97 41.2
Lalb_Chr00c44g0412581 Lupinus albus HOM05D002392 ORTHO05D002491 1.2e-08 64.7 74 47.3
Lalb_Chr08g0246571 Lupinus albus HOM05D002392 ORTHO05D002491 1.2e-08 64.7 74 47.3
CAN.G220.51 Capsicum annuum HOM05D002392 ORTHO05D002491 1.6e-08 64.3 75 40.0
DCAR_003101 Daucus carota HOM05D002392 ORTHO05D002491 1.6e-08 64.3 68 44.1
QL11p043056 Quercus lobata HOM05D002392 ORTHO05D002491 1.6e-08 64.3 106 36.8
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 2.1e-08 63.9 58 48.3
RcHm_v2.0_Chr6g0263791 Rosa chinensis HOM05D002392 ORTHO05D002491 2.1e-08 63.9 54 51.9
DCAR_003102 Daucus carota HOM05D002392 ORTHO05D002491 2.7e-08 63.5 70 42.9
Prupe.6G247700 Prunus persica HOM05D002392 ORTHO05D002491 2.7e-08 63.5 69 49.3
SGA_v2.0_scaffold13G06560 Striga asiatica HOM05D002392 ORTHO05D002491 2.7e-08 63.5 74 41.9
GSVIVG01025599001 Vitis vinifera HOM05D002392 ORTHO05D002491 2.7e-08 63.5 47 59.6
Nitab4.5_0009752g0010 Nicotiana tabacum HOM05D002392 ORTHO05D002491 3.5e-08 63.2 93 37.6
Peaxi162Scf00602g00055 Petunia axillaris HOM05D002392 ORTHO05D002491 3.5e-08 63.2 63 46.0
Cc03_g12320 Coffea canephora HOM05D002392 ORTHO05D002491 4.6e-08 62.8 79 39.2
Eucgr.I01256 Eucalyptus grandis HOM05D002392 ORTHO05D002491 4.6e-08 62.8 47 55.3
Atru.chr8.2487 Acer truncatum HOM05D002392 ORTHO05D002491 6.0e-08 62.4 60 50.0
Hma1.2p1_0066F.1_g036630 Hydrangea macrophylla HOM05D002392 ORTHO05D002491 6.0e-08 62.4 158 32.3
Haze_02364 Corylus avellana HOM05D002392 ORTHO05D002491 7.8e-08 62.0 47 53.2
Migut.J00381 Erythranthe guttata HOM05D002392 ORTHO05D002491 7.8e-08 62.0 78 38.5
CiPaw.10G150500 Carya illinoinensis HOM05D002392 ORTHO05D002491 1.0e-07 61.6 120 36.7
Ciclev10012452m.g Citrus clementina HOM05D002392 ORTHO05D002491 1.0e-07 61.6 60 50.0
FAN15G0633 Fragaria x ananassa HOM05D002392 ORTHO05D002491 1.0e-07 61.6 70 40.0
Oeu029119.1 Olea europaea HOM05D002392 ORTHO05D002491 1.0e-07 61.6 54 53.7
Solyc09g005790.1 Solanum lycopersicum HOM05D002392 ORTHO05D002491 1.0e-07 61.6 54 46.3
COL.COLO4_32442 Corchorus olitorius HOM05D002392 ORTHO05D002491 1.3e-07 61.2 141 34.0
Phvul.006G155100 Phaseolus vulgaris HOM05D002392 ORTHO05D002491 1.3e-07 61.2 96 37.5
Prupe.8G100200 Prunus persica HOM05D002392 ORTHO05D002491 1.3e-07 61.2 46 56.5
Solyc08g081600.1 Solanum lycopersicum HOM05D002392 ORTHO05D002491 1.3e-07 61.2 47 57.4
Thhalv10023072m.g Eutrema salsugineum HOM05D002392 ORTHO05D002491 1.7e-07 60.8 60 51.7
Gohir.A04G116900 Gossypium hirsutum HOM05D002392 ORTHO05D002491 1.7e-07 60.8 47 55.3
Gohir.D04G158500 Gossypium hirsutum HOM05D002392 ORTHO05D002491 1.7e-07 60.8 47 55.3
Gorai.012G146000 Gossypium raimondii HOM05D002392 ORTHO05D002491 1.7e-07 60.8 47 55.3
MBI16_g26982_MAGBIO Magnolia biondii HOM05D002392 ORTHO05D002491 1.7e-07 60.8 55 49.1
Manes.15G164900 Manihot esculenta HOM05D002392 ORTHO05D002491 1.7e-07 60.8 65 49.2
Manes.18G080400 Manihot esculenta HOM05D002392 ORTHO05D002491 1.7e-07 60.8 168 35.7
COL.COLO4_09163 Corchorus olitorius HOM05D002392 ORTHO05D002491 2.3e-07 60.5 65 43.1
Gohir.A04G078900 Gossypium hirsutum HOM05D002392 ORTHO05D002491 2.3e-07 60.5 83 38.6
Lj2C101G11 Lonicera japonica HOM05D002392 ORTHO05D002491 2.3e-07 60.5 47 55.3
Cpa.g.sc62.127 Carica papaya HOM05D002392 ORTHO05D002491 3.0e-07 60.1 47 51.1
Dinv23544 Davidia involucrata HOM05D002392 ORTHO05D002491 3.0e-07 60.1 47 53.2
Manes.18G081000 Manihot esculenta HOM05D002392 ORTHO05D002491 3.0e-07 60.1 47 55.3
Thecc.02G123700 Theobroma cacao HOM05D002392 ORTHO05D002491 3.0e-07 60.1 174 31.0
AT2G16190 Arabidopsis thaliana HOM05D002392 ORTHO05D002491 3.9e-07 59.7 61 47.5
FAN27G3171 Fragaria x ananassa HOM05D002392 ORTHO05D002491 3.9e-07 59.7 70 40.0
arahy.Tifrunner.gnm1.ann1.2W0JFY Arachis hypogaea HOM05D002392 ORTHO05D002491 5.1e-07 59.3 79 39.2
Nn7g38341 Nelumbo nucifera HOM05D002392 ORTHO05D002491 6.6e-07 58.9 77 41.6
Sabra04G0101200 Salix brachista HOM05D002392 ORTHO05D002491 6.6e-07 58.9 73 46.6
Aa31LG10G4620 Aethionema arabicum HOM05D002392 ORTHO05D002491 8.6e-07 58.5 178 32.6
CSS0003374 Camellia sinensis var. sinensis HOM05D002392 ORTHO05D002491 8.6e-07 58.5 68 42.6
CiPaw.05G062400 Carya illinoinensis HOM05D002392 ORTHO05D002491 8.6e-07 58.5 58 50.0
Nitab4.5_0000643g0020 Nicotiana tabacum HOM05D002392 ORTHO05D002491 8.6e-07 58.5 59 49.2
Sabra16G0088300 Salix brachista HOM05D002392 ORTHO05D002491 8.6e-07 58.5 47 53.2
SHI05423 Sapria himalayana HOM05D002392 ORTHO05D002491 8.6e-07 58.5 88 38.6
CSS0029133 Camellia sinensis var. sinensis HOM05D002392 ORTHO05D002491 1.1e-06 58.2 47 51.1
Duzib248G0736 Durio zibethinus HOM05D002392 ORTHO05D002491 1.5e-06 57.8 186 29.6
Gohir.D04G118050 Gossypium hirsutum HOM05D002392 ORTHO05D002491 1.5e-06 57.8 46 54.3
Gorai.009G423100 Gossypium raimondii HOM05D002392 ORTHO05D002491 1.5e-06 57.8 46 54.3
Lalb_Chr01g0019161 Lupinus albus HOM05D002392 ORTHO05D002491 1.5e-06 57.8 47 55.3
Sabra09G0087400 Salix brachista HOM05D002392 ORTHO05D002491 1.5e-06 57.8 60 48.3
Sed0015323 Sechium edule HOM05D002392 ORTHO05D002491 1.5e-06 57.8 46 50.0
Potri.016G080300 Populus trichocarpa HOM05D002392 ORTHO05D002491 1.9e-06 57.4 123 36.6
COL.COLO4_09162 Corchorus olitorius HOM05D002392 ORTHO05D002491 2.5e-06 57.0 59 40.7
Gohir.D04G118100 Gossypium hirsutum HOM05D002392 ORTHO05D002491 2.5e-06 57.0 106 36.8
Phvul.006G119300 Phaseolus vulgaris HOM05D002392 ORTHO05D002491 2.5e-06 57.0 74 39.2
Aqoxy6G01069 Aquilegia oxysepala HOM05D002392 ORTHO05D002491 3.3e-06 56.6 177 32.8
ClCG02G005160 Citrullus lanatus HOM05D002392 ORTHO05D002491 3.3e-06 56.6 54 42.6
Gorai.009G423200 Gossypium raimondii HOM05D002392 ORTHO05D002491 3.3e-06 56.6 106 36.8
Psat0s178g0200 Pisum sativum HOM05D002392 ORTHO05D002491 3.3e-06 56.6 48 50.0
HanXRQChr16g0504961 Helianthus annuus HOM05D002392 ORTHO05D002491 4.3e-06 56.2 47 48.9
QL11p039093 Quercus lobata HOM05D002392 ORTHO05D002491 4.3e-06 56.2 44 54.5
CsaV3_7G023420 Cucumis sativus L. HOM05D002392 ORTHO05D002491 5.6e-06 55.8 54 42.6
Glyma.09G034000 Glycine max HOM05D002392 ORTHO05D002491 5.6e-06 55.8 47 48.9
Thecc.05G046900 Theobroma cacao HOM05D002392 ORTHO05D002491 5.6e-06 55.8 99 34.3
VMungo0540G0113 Vigna mungo HOM05D002392 ORTHO05D002491 5.6e-06 55.8 46 54.3
Lsat_1_v5_gn_5_173521 Lactuca sativa HOM05D002392 ORTHO05D002491 7.3e-06 55.5 79 35.4
TAR376G1049 Trochodendron aralioides HOM05D002392 ORTHO05D002491 7.3e-06 55.5 106 33.0
TAR628G0203 Trochodendron aralioides HOM05D002392 ORTHO05D002491 7.3e-06 55.5 69 39.1
Sed0003953 Sechium edule HOM05D002392 ORTHO05D002491 9.6e-06 55.1 46 47.8


User provided reference genes

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