Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 2376.3 1218 100.0
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 2260.7 1260 94.0
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1890.9 1267 79.3
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1851.6 1274 78.8
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1819.7 1275 78.1
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1810.4 1280 76.6
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1791.2 1269 77.2
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1748.4 1262 75.4
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1745.3 1262 75.3
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1744.9 1248 75.9
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1743.4 1266 76.4
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1734.2 1258 75.8
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1732.2 1258 75.7
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1714.9 1273 73.9
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1561.2 1253 68.0
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1296.2 1298 57.6
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1271.9 1310 56.6
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1265.4 1343 55.5
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1260.7 1280 56.2
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1260.4 1327 55.5
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1251.1 1308 55.1
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1246.5 1331 54.8
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1239.9 1325 55.5
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1239.6 1315 55.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1236.5 1324 55.4
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1235.7 1328 54.1
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1222.6 1321 53.7
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1211.8 1302 54.5
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1211.4 1338 53.9
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1208.7 1313 53.2
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1206.0 1320 54.4
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1189.5 1316 53.6
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1189.1 1313 53.2
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1187.9 1322 53.9
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1179.9 1334 52.0
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1179.9 1304 52.9
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1179.5 1337 51.7
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1175.2 1342 52.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1174.5 1315 52.5
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1172.1 1320 52.3
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1169.8 1318 52.4
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1169.1 1298 53.1
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1167.5 1269 53.5
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1161.7 1310 52.1
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1161.7 1325 52.2
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1157.9 1315 52.1
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1156.7 1282 53.0
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1155.6 1210 55.4
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1155.2 1321 52.1
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1144.8 1326 52.0
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1136.7 1336 50.8
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1136.3 1320 51.1
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1134.8 1311 51.9
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1134.4 1385 50.4
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1131.7 1235 53.4
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1124.4 1297 51.3
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1121.3 1364 50.8
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1112.8 1312 51.5
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1103.6 1266 52.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1103.6 1337 49.4
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1102.0 1328 50.0
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1100.1 1326 50.6
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1097.0 1262 52.9
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1093.2 1289 50.8
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1092.8 1321 50.9
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1092.4 1319 50.1
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1092.4 1329 50.6
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1087.0 1291 51.5
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1085.1 1326 49.9
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1078.9 1236 52.0
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1075.8 1289 50.1
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 1.7e-311 1072.8 1305 50.2
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 2.2e-310 1069.3 1358 49.0
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 2.7e-305 1052.4 1325 49.6
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 3.6e-305 1052.0 1322 49.5
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 2.0e-303 1046.2 1235 50.3
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 5.2e-296 1021.5 1318 47.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 3.1e-293 1012.3 1333 47.9
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 1.2e-292 1010.4 1211 50.3
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 1.3e-291 1006.9 1250 49.0
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 9.5e-282 974.2 1291 46.6
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 6.8e-280 968.0 1266 48.0
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 1.3e-278 963.8 1301 46.3
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 7.0e-277 958.0 1125 51.9
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.3e-267 927.2 1236 45.9
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 5.1e-267 925.2 1115 50.1
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 9.9e-263 911.0 1137 49.3
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.5e-260 902.5 964 54.7
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.2e-255 887.5 973 54.0
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 1.1e-253 880.9 1163 47.3
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 2.7e-252 876.3 910 54.8
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 3.5e-244 849.4 976 52.2
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.3e-243 846.7 1215 44.6
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 3.8e-238 829.3 964 51.9
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 4.7e-204 716.1 1150 41.5
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 7.0e-200 702.2 902 49.0
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.7e-190 671.0 1299 37.1
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.7e-190 671.0 1299 37.1
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 2.2e-190 670.6 1346 35.7
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 1.7e-185 654.4 796 49.0
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 5.5e-181 639.4 954 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.0e-174 618.6 1350 35.2
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 3.1e-163 580.5 783 48.3
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 3.1e-155 553.9 516 58.3
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.2e-138 498.8 800 41.9
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.6e-132 478.4 1109 35.1
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 2.1e-127 461.5 548 51.8
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.2e-121 441.4 1710 28.2
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 9.6e-117 426.0 288 78.1
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 2.3e-110 404.8 430 55.6
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.0e-90 338.6 1088 30.5
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.1e-88 332.8 432 49.5
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 2.7e-87 328.2 225 75.6
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 7.9e-87 326.6 506 42.9
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.0e-86 324.7 441 47.2
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 8.0e-79 300.1 297 56.9
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 8.5e-65 253.4 194 73.7
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 7.2e-64 250.4 392 42.1
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 6.1e-63 247.3 517 36.8
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.5e-37 162.9 161 57.8
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.9e-27 129.4 167 44.9
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.1e-24 120.2 98 63.3
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 4.7e-23 114.8 87 63.2
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 2.2e-20 105.9 85 63.5
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 4.9e-20 104.8 93 58.1
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.9e-17 95.1 80 58.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.6e-15 89.7 69 59.4
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 1.1e-14 87.0 66 60.6
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.8e-14 86.3 87 49.4
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 1.1e-08 67.0 42 69.0
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 9.0e-06 57.4 70 45.7


User provided reference genes

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