Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0124_0010 Schrenkiella parvula HOM05D012419 ORTHO05D014425 1.2e-49 199.5 101 100.0
SpUn0185_0010 Schrenkiella parvula HOM05D012419 ORTHO05D014425 1.2e-49 199.5 101 100.0
BcaC02g09667 Brassica carinata HOM05D012419 ORTHO05D014425 1.7e-43 179.1 101 89.1
C04p45360 Brassica napus HOM05D012419 ORTHO05D014425 1.7e-43 179.1 101 89.1
BolC4t26118H Brassica oleracea HOM05D012419 ORTHO05D014425 1.7e-43 179.1 101 89.1
Thhalv10028105m.g Eutrema salsugineum HOM05D012419 ORTHO05D014425 2.2e-43 178.7 101 90.1
A04p11630 Brassica napus HOM05D012419 ORTHO05D014425 4.9e-43 177.6 101 88.1
BraA04t16831Z Brassica rapa HOM05D012419 ORTHO05D014425 4.9e-43 177.6 101 88.1
AL7G51670 Arabidopsis lyrata HOM05D012419 ORTHO05D014425 2.1e-38 162.2 101 82.2
CARHR264040 Cardamine hirsuta HOM05D012419 ORTHO05D014425 1.2e-36 156.4 101 80.2
CARHR291810 Cardamine hirsuta HOM05D012419 ORTHO05D014425 2.9e-35 151.8 101 78.2
Carub.0007s3710 Capsella rubella HOM05D012419 ORTHO05D014425 5.0e-35 151.0 101 77.2
AT5G38770 Arabidopsis thaliana HOM05D012419 ORTHO05D014425 2.3e-32 142.1 101 72.3
BcaB06g27241 Brassica carinata HOM05D012419 ORTHO05D014425 3.9e-32 141.4 89 79.8
Aa31LG9G16890 Aethionema arabicum HOM05D000926 ORTHO05D000707 3.1e-21 105.1 100 55.0
THA.LOC109116337 Tarenaya hassleriana HOM05D000926 ORTHO05D000707 1.2e-17 93.2 105 52.4
Thecc.04G113000 Theobroma cacao HOM05D000926 ORTHO05D000707 8.5e-11 70.5 77 49.4
Potri.017G107300 Populus trichocarpa HOM05D000926 ORTHO05D000707 4.2e-10 68.2 90 45.6
Duzib138G1671 Durio zibethinus HOM05D000926 ORTHO05D000707 9.4e-10 67.0 77 46.8
QL02p063891 Quercus lobata HOM05D000926 ORTHO05D000707 9.4e-10 67.0 91 41.8
Manes.02G062600 Manihot esculenta HOM05D000926 ORTHO05D000707 1.2e-09 66.6 83 44.6
Potri.004G108440 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.6e-09 66.2 102 41.2
Rhsim08G0078900 Rhododendron simsii HOM05D000926 ORTHO05D000707 2.1e-09 65.9 79 49.4
Sabra17G0090100 Salix brachista HOM05D000926 ORTHO05D000707 3.6e-09 65.1 86 45.3
Dinv34883 Davidia involucrata HOM05D000926 ORTHO05D000707 6.1e-09 64.3 87 44.8
Lalb_Chr10g0092471 Lupinus albus HOM05D000926 ORTHO05D000707 6.1e-09 64.3 82 43.9
Sabra04G0074000 Salix brachista HOM05D000926 ORTHO05D000707 6.1e-09 64.3 94 44.7
ATR0691G108 Amborella trichopoda HOM05D000926 ORTHO05D000707 1.0e-08 63.5 85 44.7
Cfa007731 Carpinus fangiana HOM05D000926 ORTHO05D000707 1.0e-08 63.5 85 40.0
Duzib211G0100 Durio zibethinus HOM05D000926 ORTHO05D000707 1.4e-08 63.2 77 49.4
CiPaw.03G080100 Carya illinoinensis HOM05D000926 ORTHO05D000707 2.3e-08 62.4 97 38.1
Potri.017G107200 Populus trichocarpa HOM05D000926 ORTHO05D000707 2.3e-08 62.4 91 40.7
Haze_14349 Corylus avellana HOM05D000926 ORTHO05D000707 4.0e-08 61.6 79 43.0
Gohir.D07G185000 Gossypium hirsutum HOM05D000926 ORTHO05D000707 4.0e-08 61.6 80 41.2
Gorai.001G205500 Gossypium raimondii HOM05D000926 ORTHO05D000707 4.0e-08 61.6 80 41.2
Potri.017G107400 Populus trichocarpa HOM05D000926 ORTHO05D000707 4.0e-08 61.6 89 37.1
Potri.004G108680 Populus trichocarpa HOM05D000926 ORTHO05D000707 8.8e-08 60.5 95 38.9
Medtr7g018090 Medicago truncatula HOM05D000926 ORTHO05D000707 1.5e-07 59.7 84 40.5
CSS0017323 Camellia sinensis var. sinensis HOM05D000926 ORTHO05D000707 2.0e-07 59.3 88 43.2
Gohir.A07G178200 Gossypium hirsutum HOM05D000926 ORTHO05D000707 2.0e-07 59.3 80 40.0
MSTRG.2959 Avicennia marina HOM05D000926 ORTHO05D000707 2.6e-07 58.9 91 37.4
Manes.01G106100 Manihot esculenta HOM05D000926 ORTHO05D000707 3.3e-07 58.5 83 39.8
Ciclev10013138m.g Citrus clementina HOM05D000926 ORTHO05D000707 4.4e-07 58.2 85 40.0
Manes.01G105900 Manihot esculenta HOM05D000926 ORTHO05D000707 4.4e-07 58.2 80 43.8
Oeu049341.1 Olea europaea HOM05D000926 ORTHO05D000707 5.7e-07 57.8 100 39.0
Eucgr.J01435 Eucalyptus grandis HOM05D000926 ORTHO05D000707 9.7e-07 57.0 77 44.2
Sabra17G0090200 Salix brachista HOM05D000926 ORTHO05D000707 9.7e-07 57.0 91 40.7
Aqoxy3G03797 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 1.3e-06 56.6 77 44.2
Ciclev10023021m.g Citrus clementina HOM05D000926 ORTHO05D000707 1.3e-06 56.6 93 36.6
Manes.02G062400 Manihot esculenta HOM05D000926 ORTHO05D000707 1.3e-06 56.6 81 43.2
PGR004G2735 Punica granatum HOM05D000926 ORTHO05D000707 1.3e-06 56.6 93 38.7
Medtr6g016480 Medicago truncatula HOM05D000926 ORTHO05D000707 1.7e-06 56.2 80 40.0
Potri.004G108800 Populus trichocarpa HOM05D000926 ORTHO05D000707 1.7e-06 56.2 82 40.2
Aqoxy3G00596 Aquilegia oxysepala HOM05D000926 ORTHO05D000707 2.2e-06 55.8 80 40.0
Sc10g0000430 Simmondsia chinensis HOM05D000926 ORTHO05D000707 2.2e-06 55.8 85 38.8
Eucgr.J01437 Eucalyptus grandis HOM05D000926 ORTHO05D000707 2.8e-06 55.5 77 45.5
Hma1.2p1_0588F.1_g184540 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 2.8e-06 55.5 79 44.3
Hma1.2p1_2231F.1_g317580 Hydrangea macrophylla HOM05D000926 ORTHO05D000707 2.8e-06 55.5 79 44.3
Peaxi162Scf00479g00093 Petunia axillaris HOM05D000926 ORTHO05D000707 2.8e-06 55.5 102 39.2
Glyma.19G038700 Glycine max HOM05D000926 ORTHO05D000707 3.7e-06 55.1 82 40.2
Oeu032854.1 Olea europaea HOM05D000926 ORTHO05D000707 4.8e-06 54.7 86 43.0
TAR374G1048 Trochodendron aralioides HOM05D000926 ORTHO05D000707 4.8e-06 54.7 77 42.9
Psat1g064600 Pisum sativum HOM05D000926 ORTHO05D000707 6.3e-06 54.3 80 38.8
SalBow1G1369 Salvia bowleyana HOM05D000926 ORTHO05D000707 6.3e-06 54.3 77 42.9
TPR.G3243 Trifolium pratense HOM05D000926 ORTHO05D000707 6.3e-06 54.3 97 34.0
COL.COLO4_33437 Corchorus olitorius HOM05D000926 ORTHO05D000707 8.2e-06 53.9 77 37.7
Psat3g193240 Pisum sativum HOM05D000926 ORTHO05D000707 8.2e-06 53.9 85 38.8


User provided reference genes

Program Settings