Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.5e-128 462.2 252 100.0
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.9e-123 446.0 245 99.6
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 8.4e-84 314.3 246 76.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 7.9e-82 307.8 246 73.2
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.9e-80 303.1 253 70.8
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 3.1e-78 295.8 246 73.2
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 4.1e-78 295.4 246 73.2
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 5.3e-78 295.0 246 72.4
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 8.5e-76 287.7 249 68.3
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.5e-75 286.2 248 69.0
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 8.8e-73 277.7 244 70.5
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 8.8e-73 277.7 244 70.5
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 8.8e-73 277.7 244 70.5
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 8.8e-57 224.6 182 72.5
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 5.0e-52 208.8 254 53.1
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 2.8e-39 166.4 270 47.4
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 1.8e-38 163.7 265 46.4
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 5.9e-37 158.7 251 45.8
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 1.7e-36 157.1 255 49.0
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.5e-35 154.1 252 45.2
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.5e-35 154.1 252 44.4
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 2.5e-35 153.3 258 44.2
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.5e-35 152.1 256 44.5
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 7.2e-35 151.8 254 48.0
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.6e-34 149.4 254 44.1
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 4.7e-34 149.1 251 45.4
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.0e-33 147.9 257 47.1
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.3e-33 146.7 258 47.7
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.0e-33 146.4 254 45.3
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 5.7e-32 142.1 260 43.8
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 9.8e-32 141.4 255 43.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 2.8e-31 139.8 255 43.1
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 3.7e-31 139.4 242 47.9
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.1e-30 137.9 263 43.3
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 2.4e-30 136.7 255 42.4
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 4.1e-30 136.0 236 47.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 4.1e-30 136.0 306 39.2
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 5.4e-30 135.6 243 45.3
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 2.0e-29 133.7 253 43.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.7e-29 133.3 252 46.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.9e-28 129.4 257 44.0
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.9e-28 129.4 256 40.6
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 8.6e-28 128.3 242 41.7
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.1e-27 127.9 259 40.5
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.5e-27 126.7 256 41.8
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.3e-27 126.3 246 46.7
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 9.5e-27 124.8 241 44.8
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.2e-26 124.4 244 41.0
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.2e-26 124.4 250 41.2
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.6e-26 124.0 250 40.4
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.6e-26 122.9 254 43.7
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 6.1e-26 122.1 254 40.6
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.0e-25 121.3 268 41.8
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.0e-25 121.3 252 43.7
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.4e-25 120.9 246 42.7
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.4e-25 120.9 247 41.7
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.8e-25 120.6 254 40.9
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.3e-25 120.2 258 40.7
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.3e-25 120.2 258 40.7
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 4.0e-25 119.4 252 38.9
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 4.0e-25 119.4 257 42.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 4.0e-25 119.4 254 40.6
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 8.9e-25 118.2 251 39.8
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 8.9e-25 118.2 267 42.7
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.2e-24 117.9 238 41.2
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.5e-24 117.5 230 44.8
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.5e-24 117.5 252 40.9
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.0e-24 117.1 239 43.1
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 7.5e-24 115.2 292 36.6
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.7e-23 114.0 263 38.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 8.3e-23 111.7 257 40.5
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 5.4e-22 109.0 250 39.6
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 6.0e-21 105.5 260 40.4
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 7.8e-21 105.1 251 40.2
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.7e-20 104.0 266 38.3
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 3.9e-20 102.8 288 37.8
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.9e-20 102.8 252 37.7
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 3.9e-20 102.8 253 39.1
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 8.6e-20 101.7 269 37.9
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.1e-19 101.3 279 36.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.3e-19 99.8 250 40.0
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.2e-18 97.8 223 37.7
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.6e-18 97.4 269 35.7
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.6e-18 97.4 258 37.2
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.1e-18 97.1 236 39.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.6e-18 96.3 275 35.3
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.1e-17 94.7 261 34.9
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.8e-17 94.0 292 35.3
C03p92730 Brassica napus HOM05D002452 ORTHO05D006766 3.1e-17 93.2 78 65.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 3.1e-17 93.2 187 42.8
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.1e-17 93.2 292 34.9
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.1e-17 93.2 292 34.9
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 5.2e-17 92.4 292 34.9
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 9.8e-16 88.2 307 32.9
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 9.8e-16 88.2 253 36.4
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 9.8e-16 88.2 184 44.6
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.7e-15 87.4 307 32.9
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 8.3e-15 85.1 205 37.6
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.4e-14 84.3 290 33.1
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 9.2e-14 81.6 293 33.4
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 2.1e-13 80.5 171 37.4
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.0e-13 79.0 101 50.5
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.7e-12 77.4 186 37.6
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 3.9e-12 76.3 250 35.2
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 3.9e-12 76.3 250 34.8
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.5e-11 73.6 258 36.4
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 7.3e-11 72.0 118 46.6
A06p29200 Brassica napus HOM05D000817 ORTHO05D000702 2.1e-10 70.5 58 67.2
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.1e-10 70.5 209 36.4
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 1.4e-09 67.8 203 36.5
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 2.6e-08 63.5 248 33.1
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 4.4e-08 62.8 170 34.1
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 9.9e-08 61.6 203 32.0
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 9.2e-06 55.1 265 29.8


User provided reference genes

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