Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 0.0e+00 1183.3 596 100.0
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 0.0e+00 1183.3 596 100.0
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 0.0e+00 1077.0 596 90.3
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 0.0e+00 1075.8 596 90.6
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.2e-309 1065.8 596 90.3
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 9.3e-307 1056.2 596 89.6
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 7.9e-306 1053.1 596 89.6
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 7.6e-301 1036.6 596 88.3
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.3e-300 1035.8 601 87.5
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 6.2e-295 1016.9 596 87.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.6e-293 1010.0 596 86.2
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.2e-258 896.3 596 75.3
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.0e-253 879.0 527 86.0
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.0e-252 876.7 527 85.4
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 2.7e-250 868.6 596 75.0
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.1e-238 830.1 595 72.4
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 1.2e-226 790.0 549 78.1
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 4.9e-207 724.9 596 62.1
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.9e-203 713.0 597 60.6
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.2e-202 710.3 601 60.6
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.1e-202 709.5 601 60.4
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 2.1e-202 709.5 599 61.3
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.4e-201 706.8 599 59.6
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.4e-201 706.8 601 60.1
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.1e-201 705.7 601 60.1
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 9.0e-201 704.1 598 62.0
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 1.2e-200 703.7 603 60.2
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 4.4e-200 701.8 594 60.3
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 4.6e-197 691.8 598 59.5
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 7.8e-197 691.0 597 59.3
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 5.1e-196 688.3 599 60.4
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 5.6e-195 684.9 597 59.8
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 2.1e-194 682.9 600 60.2
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 3.6e-194 682.2 624 58.2
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.1e-193 679.1 597 59.1
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.1e-193 679.1 596 58.6
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 5.3e-193 678.3 597 58.8
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 9.0e-193 677.6 596 59.7
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 1.5e-192 676.8 594 58.4
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.0e-192 676.4 597 59.1
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 7.6e-192 674.5 597 58.6
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 9.9e-192 674.1 595 58.2
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.2e-191 672.9 597 59.0
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 6.4e-191 671.4 597 59.0
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 6.4e-191 671.4 600 59.2
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 6.4e-191 671.4 598 58.5
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 1.9e-190 669.8 596 58.6
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.9e-190 669.8 596 59.4
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 3.2e-190 669.1 594 59.1
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 5.4e-190 668.3 597 57.8
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 5.4e-190 668.3 596 58.1
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.6e-189 666.8 598 58.0
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.1e-189 666.4 597 58.5
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.5e-189 665.6 597 58.5
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 6.0e-189 664.8 597 58.0
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.3e-188 663.7 598 57.7
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.8e-188 663.3 599 57.9
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 3.9e-188 662.1 594 56.7
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.5e-187 660.2 597 58.3
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 4.3e-187 658.7 606 56.9
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.6e-186 656.8 600 57.7
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 3.7e-186 655.6 598 57.7
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 1.1e-185 654.1 597 57.5
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.8e-185 653.3 597 57.5
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.8e-185 653.3 598 56.7
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 3.1e-185 652.5 606 56.6
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 4.0e-185 652.1 597 57.5
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 2.0e-184 649.8 602 57.6
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 2.6e-184 649.4 596 57.6
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 4.5e-184 648.7 600 57.3
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 4.5e-184 648.7 668 52.2
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.3e-183 647.1 672 52.7
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 2.2e-183 646.4 605 56.9
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 5.5e-182 641.7 594 55.1
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 5.5e-182 641.7 599 56.6
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 7.1e-182 641.3 601 56.4
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 7.1e-182 641.3 630 54.4
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 4.6e-181 638.6 615 55.3
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 6.0e-181 638.3 604 57.0
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 7.9e-181 637.9 598 55.7
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.8e-180 636.7 597 55.9
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.0e-180 636.0 598 56.2
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 3.0e-180 636.0 619 55.1
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.1e-180 635.2 596 56.7
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.5e-179 633.6 558 60.0
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 5.6e-179 631.7 615 55.4
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-178 630.2 597 55.4
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.6e-178 630.2 597 55.9
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 4.8e-178 628.6 600 56.2
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.8e-177 626.7 596 55.0
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.6e-176 622.9 636 53.1
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 8.4e-175 617.8 607 55.2
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 5.5e-174 615.1 597 54.3
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.1e-172 608.6 597 54.8
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 7.7e-168 594.7 536 57.1
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 1.9e-166 590.1 599 53.3
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.9e-165 584.7 558 56.1
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.4e-164 583.9 506 61.1
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 2.3e-164 583.2 562 54.6
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 6.5e-159 565.1 602 51.0
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 2.7e-157 559.7 596 49.5
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 2.3e-156 556.6 603 51.4
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 2.0e-155 553.5 606 50.7
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.5e-152 543.9 579 52.0
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 4.1e-145 519.2 598 45.3
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 5.0e-143 512.3 598 48.5
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 2.3e-140 503.4 467 64.0
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-139 499.6 531 52.9
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 6.3e-138 495.4 621 44.8
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 5.9e-136 488.8 417 62.1
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 3.8e-135 486.1 469 56.9
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 1.2e-133 481.1 448 57.6
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.3e-127 460.3 603 43.0
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 8.3e-114 415.2 396 55.6
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 6.6e-111 405.6 598 40.0
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 8.9e-108 395.2 572 40.7
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 8.3e-106 388.7 612 37.4
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.9e-102 377.5 280 68.2
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.1e-101 374.0 596 39.1
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 8.4e-90 335.5 629 36.1
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 1.7e-87 327.8 249 65.5
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.6e-83 313.9 302 53.6
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 2.4e-81 307.4 411 47.0
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 3.2e-81 307.0 391 49.9
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 3.3e-78 297.0 274 56.9
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 9.6e-78 295.4 167 91.0
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.2e-75 288.5 620 30.8
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 6.0e-64 249.6 249 53.8
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 6.9e-60 236.1 134 88.8
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.3e-58 231.9 414 39.1
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 3.2e-57 227.3 128 92.2
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 7.2e-49 199.5 116 89.7
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.2e-48 198.7 131 67.9
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.5e-46 191.8 284 41.5
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.3e-46 190.3 289 41.5
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 3.4e-43 180.6 564 28.0
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 4.7e-40 170.2 156 51.9
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 5.3e-36 156.8 291 38.8
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 2.1e-24 118.2 869 21.4
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.1e-24 118.2 94 59.6
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 8.0e-24 116.3 133 42.1
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 3.0e-23 114.4 80 65.0
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 9.8e-22 109.4 166 44.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 9.8e-22 109.4 166 44.0
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.9e-17 95.1 75 62.7
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.7e-16 91.3 93 54.8
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 3.7e-13 80.9 42 88.1
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 3.7e-13 80.9 42 88.1
C03p30700 Brassica napus HOM05D004766 ORTHO05D006159 4.9e-13 80.5 108 43.5
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.4e-12 78.2 39 92.3
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.1e-12 77.8 88 45.5
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 1.2e-11 75.9 39 89.7
BraA10t43874Z Brassica rapa HOM05D004766 ORTHO05D033383 1.5e-09 68.9 87 47.1
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 2.5e-09 68.2 55 56.4
BolC9t58408H Brassica oleracea HOM05D004766 ORTHO05D033383 1.2e-08 65.9 102 43.1
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.4e-07 62.4 108 33.3
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 5.2e-07 60.5 57 52.6


User provided reference genes

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