Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.2e-88 328.9 169 100.0
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.2e-88 328.9 169 100.0
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 4.3e-84 314.7 169 94.7
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 5.7e-84 314.3 169 94.1
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 9.7e-84 313.5 169 94.1
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.6e-83 312.8 169 93.5
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 8.2e-83 310.5 169 92.9
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 8.2e-83 310.5 169 92.9
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.8e-82 309.3 169 92.9
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 2.4e-82 308.9 169 92.9
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.3e-80 303.1 162 93.2
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 2.2e-80 302.4 169 91.1
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 3.9e-69 265.0 169 78.7
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 4.8e-67 258.1 151 85.4
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 9.1e-66 253.8 158 79.1
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.5e-65 253.1 156 78.8
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.5e-65 253.1 156 78.8
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.6e-65 252.3 162 76.5
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.0e-64 250.4 161 77.0
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.3e-64 250.0 158 77.8
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.3e-64 250.0 163 75.5
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.3e-64 250.0 163 75.5
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.2e-64 249.2 156 77.6
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 2.9e-64 248.8 163 74.2
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 2.9e-64 248.8 159 78.0
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 3.8e-64 248.4 161 77.0
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 1.1e-63 246.9 159 76.7
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.4e-63 246.5 159 77.4
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 1.4e-63 246.5 161 77.0
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 1.4e-63 246.5 158 76.6
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.9e-63 246.1 157 77.7
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 2.5e-63 245.7 159 76.7
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 2.5e-63 245.7 163 75.5
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 2.5e-63 245.7 158 76.6
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 4.2e-63 245.0 156 76.3
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 4.2e-63 245.0 160 75.6
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 5.5e-63 244.6 154 77.3
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 7.2e-63 244.2 160 74.4
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 7.2e-63 244.2 160 76.2
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 7.2e-63 244.2 160 76.2
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 7.2e-63 244.2 159 75.5
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 7.2e-63 244.2 162 74.1
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.6e-62 243.0 161 75.2
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.6e-62 243.0 160 77.5
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 2.7e-62 242.3 154 77.9
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 3.6e-62 241.9 166 72.9
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 4.7e-62 241.5 158 75.9
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 4.7e-62 241.5 154 77.3
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 6.1e-62 241.1 157 73.2
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 6.1e-62 241.1 157 75.2
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 6.1e-62 241.1 160 73.1
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 1.4e-61 240.0 162 72.2
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.8e-61 239.6 158 75.3
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 2.3e-61 239.2 154 78.6
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 3.0e-61 238.8 160 75.0
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 3.0e-61 238.8 163 74.2
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 3.0e-61 238.8 146 82.2
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 3.9e-61 238.4 159 74.2
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 3.9e-61 238.4 164 73.2
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 5.2e-61 238.0 154 76.6
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 6.7e-61 237.7 160 73.8
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 6.7e-61 237.7 154 76.6
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 6.7e-61 237.7 158 74.1
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 6.7e-61 237.7 158 74.1
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 8.8e-61 237.3 159 74.2
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.1e-60 236.9 158 74.1
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 2.0e-60 236.1 157 73.2
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 2.0e-60 236.1 154 72.7
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 2.6e-60 235.7 157 74.5
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.6e-60 235.7 158 73.4
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 3.3e-60 235.3 158 74.7
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 7.4e-60 234.2 159 72.3
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.7e-59 233.0 160 71.9
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.7e-59 233.0 146 78.1
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 2.2e-59 232.6 159 72.3
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 2.8e-59 232.3 159 71.7
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 8.2e-59 230.7 157 73.2
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 1.1e-58 230.3 157 70.1
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.4e-58 229.9 151 75.5
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.8e-58 229.6 150 74.7
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.4e-58 229.2 158 74.1
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 4.1e-58 228.4 155 71.6
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 9.1e-58 227.3 154 72.1
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 1.2e-57 226.9 146 75.3
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.6e-57 226.5 151 74.2
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 2.6e-57 225.7 152 73.0
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 4.5e-57 224.9 152 73.7
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 1.0e-56 223.8 156 69.9
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.3e-56 223.4 144 76.4
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 5.0e-56 221.5 141 76.6
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 6.5e-56 221.1 160 71.2
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.1e-54 216.1 178 63.5
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 2.7e-54 215.7 195 60.0
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 6.1e-54 214.5 166 66.9
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 8.8e-53 210.7 177 63.8
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.7e-51 206.5 115 89.6
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 2.9e-48 195.7 162 56.2
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 9.4e-47 190.7 168 59.5
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 4.1e-42 175.3 169 53.8
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 1.6e-41 173.3 110 80.0
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.6e-41 173.3 120 72.5
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 7.7e-41 171.0 95 84.2
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 2.9e-40 169.1 94 83.0
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.9e-39 166.4 159 52.8
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 1.2e-38 163.7 151 57.6
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 6.8e-37 157.9 157 55.4
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 8.9e-37 157.5 157 50.3
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.4e-34 150.2 154 50.6
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 2.4e-34 149.4 261 41.0
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 1.6e-33 146.7 154 44.8
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 3.7e-27 125.6 140 44.3
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 2.0e-25 119.8 88 70.5
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 6.4e-19 98.2 77 64.9
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 8.3e-19 97.8 64 75.0
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 2.1e-17 93.2 62 72.6
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.0e-16 90.9 55 78.2
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 3.0e-16 89.4 45 88.9
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.9e-16 89.0 93 53.8
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.4e-13 80.5 63 58.7
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 8.9e-13 77.8 37 94.6
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 5.8e-12 75.1 37 89.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 2.1e-09 66.6 151 29.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.1e-07 60.8 48 64.6


User provided reference genes

Program Settings