Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.0e-101 372.5 196 100.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.0e-101 372.5 196 100.0
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.2e-98 363.2 196 97.4
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 2.1e-98 362.5 196 96.9
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.7e-98 362.1 196 97.4
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.7e-98 362.1 196 97.4
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.7e-98 362.1 196 97.4
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.7e-98 362.1 196 97.4
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 3.6e-98 361.7 196 96.4
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.4e-97 359.8 196 95.9
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.8e-97 359.4 197 96.4
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.8e-97 359.4 197 96.4
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.8e-97 359.4 197 96.4
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 8.8e-97 357.1 197 95.9
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.6e-96 355.5 196 96.4
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 3.1e-94 348.6 194 95.4
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.8e-90 335.5 205 87.3
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.5e-88 329.7 257 73.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.1e-86 321.6 190 89.5
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 8.9e-81 303.9 188 83.5
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 8.9e-81 303.9 195 81.0
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 8.9e-81 303.9 195 81.0
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.2e-80 303.5 190 82.6
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 5.8e-80 301.2 190 82.6
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 7.5e-80 300.8 195 81.5
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.3e-79 300.1 195 80.5
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.9e-79 298.9 189 81.5
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.9e-79 298.9 189 81.5
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 2.9e-79 298.9 188 81.9
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 3.7e-79 298.5 182 83.0
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 6.4e-79 297.7 195 80.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 6.4e-79 297.7 187 79.7
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.3e-79 297.4 186 81.7
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.4e-78 296.6 189 83.1
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 3.2e-78 295.4 184 83.7
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 5.4e-78 294.7 182 82.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 5.4e-78 294.7 185 82.2
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.0e-78 294.3 185 79.5
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 9.2e-78 293.9 181 82.3
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.2e-77 293.5 189 81.0
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.2e-77 293.5 187 78.6
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.2e-77 293.5 188 78.7
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 2.0e-77 292.7 196 77.0
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 4.6e-77 291.6 172 84.3
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.6e-77 291.6 195 80.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 4.6e-77 291.6 187 78.1
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 6.0e-77 291.2 176 83.5
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.3e-76 290.0 185 80.5
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.3e-76 290.0 176 81.8
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 1.7e-76 289.7 196 79.1
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.7e-76 289.7 188 79.3
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.3e-76 289.3 184 81.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.3e-76 289.3 185 80.0
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 3.0e-76 288.9 190 80.0
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 3.9e-76 288.5 184 80.4
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 3.9e-76 288.5 191 80.1
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 6.6e-76 287.7 187 77.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 1.1e-75 287.0 185 79.5
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 186 78.5
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 189 78.3
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.5e-75 286.6 176 82.4
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.5e-75 285.8 190 77.4
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 175 82.3
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.5e-75 285.8 187 78.6
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.3e-75 285.4 194 76.8
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.3e-75 285.4 199 75.4
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.3e-75 285.0 182 80.2
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 4.3e-75 285.0 196 74.5
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.6e-75 284.6 174 82.2
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.3e-75 284.3 186 78.5
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 7.3e-75 284.3 194 76.8
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 7.3e-75 284.3 172 83.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 9.5e-75 283.9 188 78.7
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 9.5e-75 283.9 172 83.1
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 9.5e-75 283.9 178 80.9
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.6e-74 283.1 171 81.3
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.1e-74 282.7 186 78.5
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-74 282.7 174 81.6
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.1e-74 282.7 189 77.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.8e-74 282.3 188 76.6
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.8e-74 282.3 171 83.0
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 2.8e-74 282.3 229 69.0
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.6e-74 282.0 187 78.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.6e-74 282.0 189 77.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 6.2e-74 281.2 179 81.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 6.2e-74 281.2 198 75.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 8.0e-74 280.8 177 79.1
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.1e-73 280.4 194 75.3
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.3e-73 279.3 194 75.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.3e-73 279.3 175 81.1
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 3.1e-73 278.9 197 74.6
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 4.0e-73 278.5 184 78.8
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.2e-72 276.9 187 77.5
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.5e-72 276.6 192 76.6
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.5e-72 276.6 188 76.6
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.6e-72 275.8 183 77.0
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.6e-72 275.8 183 78.1
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 3.4e-72 275.4 183 78.1
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 5.8e-72 274.6 187 74.9
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.5e-72 274.2 185 76.8
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 7.5e-72 274.2 204 71.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 2.9e-71 272.3 185 77.3
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 6.4e-71 271.2 177 78.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.3e-71 270.8 178 75.8
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.3e-71 270.8 220 65.5
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 8.3e-71 270.8 186 75.8
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.2e-69 266.9 229 62.9
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.5e-67 260.0 190 72.6
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 3.3e-67 258.8 154 85.7
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 2.3e-65 252.7 231 61.9
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 8.9e-65 250.8 158 81.0
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.8e-64 248.1 189 71.4
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 8.3e-63 244.2 168 70.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 3.2e-62 242.3 160 76.9
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.0e-60 235.7 186 69.4
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 5.1e-60 235.0 196 69.4
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 2.5e-59 232.6 141 84.4
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 3.6e-58 228.8 138 82.6
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.1e-57 227.3 139 85.6
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.8e-57 226.5 184 63.6
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 9.9e-56 220.7 180 63.3
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.7e-55 219.9 131 86.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.4e-54 216.9 128 85.9
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 5.4e-54 214.9 173 59.5
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.3e-52 210.3 180 60.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-49 200.7 123 83.7
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 4.0e-49 198.7 142 73.2
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 5.3e-49 198.4 131 77.9
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.4e-48 195.3 126 79.4
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 6.4e-47 191.4 125 76.0
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.9e-46 189.9 110 87.3
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 5.4e-46 188.3 125 74.4
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.9e-43 179.9 195 54.9
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-40 170.6 102 83.3
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-40 170.2 109 80.7
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.8e-40 168.3 113 78.8
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.1e-37 159.8 91 85.7
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-35 152.5 99 79.8
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 7.4e-35 151.4 102 76.5
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.4e-33 146.4 102 76.5
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 2.0e-32 143.3 180 42.2
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-31 139.8 82 86.6
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.4e-30 137.1 92 76.1
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 4.2e-30 135.6 92 75.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.5e-27 127.1 104 68.3
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.5e-27 126.3 162 40.1
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.3e-27 125.6 180 38.3
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 4.3e-27 125.6 171 38.6
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.6e-26 123.6 90 64.4
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 4.8e-26 122.1 101 66.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.0e-25 119.0 93 67.7
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.2e-24 117.5 75 78.7
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.3e-19 99.0 62 79.0
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.2e-14 82.4 53 73.6
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.6e-13 79.3 49 77.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.7e-10 70.5 114 42.1
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.2e-10 70.1 114 42.1
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.2e-10 70.1 114 42.1
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.7e-10 69.3 114 42.1
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.1e-09 67.8 114 41.2
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 2.0e-08 63.5 67 55.2
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.7e-07 60.5 115 38.3
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.2e-07 60.1 36 80.6


User provided reference genes

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