Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.4e-142 509.6 256 100.0
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.4e-142 509.6 256 100.0
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.5e-107 392.5 265 77.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 7.2e-107 391.0 266 77.1
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 7.2e-107 391.0 266 77.1
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 2.0e-96 356.3 264 73.5
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 3.6e-90 335.5 269 68.4
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 8.9e-89 330.9 270 68.1
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.2e-85 320.5 265 72.5
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.2e-85 320.5 262 70.2
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 4.0e-81 305.4 262 67.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.4e-78 296.2 240 72.9
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.0e-76 289.3 262 66.4
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.6e-74 283.5 268 67.2
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 6.8e-65 251.5 263 60.5
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 3.3e-59 232.6 267 54.3
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.3e-52 210.7 271 49.4
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.0e-44 184.5 260 46.9
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 3.6e-42 176.0 293 43.3
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.4e-41 174.1 266 46.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.2e-40 171.0 276 41.3
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 2.0e-40 170.2 260 44.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.6e-40 169.9 280 43.9
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.5e-40 169.1 253 43.9
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 7.6e-40 168.3 246 45.1
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.3e-39 167.5 276 43.5
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.9e-39 166.4 240 46.2
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.9e-39 166.4 253 43.1
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 3.8e-39 166.0 267 39.7
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 8.4e-39 164.9 255 43.5
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 8.4e-39 164.9 283 41.0
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.2e-38 162.9 260 43.1
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.4e-38 162.2 277 41.2
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 9.3e-38 161.4 261 42.9
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.6e-37 160.6 244 42.6
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.7e-37 159.8 290 40.3
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.0e-37 158.7 296 39.9
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 7.9e-37 158.3 269 41.6
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.0e-36 157.9 265 40.0
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.0e-36 157.9 257 43.2
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.0e-36 157.9 245 41.6
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.3e-36 157.5 273 43.6
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 6.7e-36 155.2 264 43.2
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.5e-35 153.3 279 39.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 3.3e-35 152.9 267 41.2
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 3.3e-35 152.9 302 38.1
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 7.4e-35 151.8 281 37.7
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.4e-35 151.8 273 40.7
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.6e-35 151.4 296 39.9
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-34 150.2 279 38.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.8e-34 149.8 260 43.1
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 6.2e-34 148.7 260 41.9
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 6.2e-34 148.7 260 41.9
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 8.1e-34 148.3 257 41.6
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.1e-33 147.9 268 41.4
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.8e-33 147.1 260 40.0
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.8e-33 147.1 258 42.2
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 4.0e-33 146.0 265 40.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 4.0e-33 146.0 275 40.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 4.0e-33 146.0 263 38.4
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.9e-33 145.2 283 38.2
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.2e-32 144.4 285 40.0
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.4e-32 142.9 256 39.8
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 4.5e-32 142.5 296 38.9
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 4.5e-32 142.5 216 41.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.8e-32 142.1 279 38.7
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 5.8e-32 142.1 263 36.9
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 9.9e-32 141.4 141 56.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 9.9e-32 141.4 251 40.2
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 9.9e-32 141.4 260 37.3
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 9.9e-32 141.4 238 37.4
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.3e-31 141.0 257 39.3
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.3e-31 141.0 256 37.1
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.7e-31 140.6 271 37.3
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.2e-31 140.2 246 37.4
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 3.8e-31 139.4 317 34.4
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 8.4e-31 138.3 259 37.5
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.4e-30 137.5 297 36.0
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.9e-30 137.1 277 38.3
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-30 137.1 279 36.9
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 5.5e-30 135.6 294 35.0
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 9.3e-30 134.8 310 33.5
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 9.3e-30 134.8 127 56.7
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.6e-29 134.0 290 33.4
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 2.7e-29 133.3 302 36.8
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.5e-29 132.9 312 34.6
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 4.6e-29 132.5 156 50.0
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 7.9e-29 131.7 129 51.9
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 7.9e-29 131.7 175 42.9
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.3e-28 130.2 175 42.3
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.3e-28 130.2 328 32.9
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.0e-28 129.8 140 49.3
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 6.7e-28 128.6 242 36.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 8.7e-28 128.3 145 48.3
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 8.7e-28 128.3 156 46.8
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.1e-27 127.9 146 49.3
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.5e-27 127.5 151 49.7
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 2.5e-27 126.7 253 34.0
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-27 126.3 276 36.2
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.3e-27 125.9 254 39.4
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.3e-27 125.9 311 33.4
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 7.4e-27 125.2 296 33.1
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.3e-26 124.4 260 36.9
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.3e-26 124.4 156 45.5
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.6e-26 124.0 209 38.3
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 2.8e-26 123.2 275 34.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.8e-26 123.2 212 40.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.8e-26 122.5 244 36.9
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 6.2e-26 122.1 239 35.1
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 6.2e-26 122.1 167 46.1
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 8.2e-26 121.7 159 44.0
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.8e-25 120.6 241 36.9
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 3.1e-25 119.8 268 38.1
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.1e-25 119.8 352 29.8
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 6.9e-25 118.6 307 33.6
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 9.0e-25 118.2 256 37.9
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 9.0e-25 118.2 243 36.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.0e-25 118.2 165 48.5
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.2e-24 117.9 308 32.5
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.2e-24 117.9 142 49.3
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.6e-24 116.7 203 36.9
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 4.5e-24 115.9 306 33.7
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.6e-24 115.2 165 47.3
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.3e-23 114.4 307 32.9
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.9e-23 113.2 306 31.7
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.9e-23 112.5 239 38.1
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 4.9e-23 112.5 235 34.5
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 6.5e-23 112.1 360 31.1
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 8.4e-23 111.7 275 32.4
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 3.2e-22 109.8 223 36.8
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.6e-21 105.9 263 31.6
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.3e-20 104.4 245 32.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.3e-20 103.6 151 41.1
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 3.0e-20 103.2 113 48.7
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 6.7e-20 102.1 119 48.7
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.1e-19 101.3 313 30.4
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.3e-19 99.8 227 36.1
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 7.4e-19 98.6 263 35.0
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.6e-18 97.4 181 40.9
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.8e-18 95.9 114 47.4
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.3e-18 95.5 116 46.6
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-17 93.2 82 53.7
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.4e-16 89.7 234 35.0
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 4.5e-16 89.4 254 30.7
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.5e-15 85.1 78 59.0
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.2e-14 83.2 234 33.3
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 9.4e-14 81.6 229 28.4
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.7e-13 80.1 240 28.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.7e-13 80.1 252 31.0
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 3.9e-12 76.3 315 25.4
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 2.5e-11 73.6 127 37.8
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 1.5e-08 64.3 105 44.8
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.5e-08 64.3 163 34.4
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.9e-06 57.4 220 25.9
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 3.2e-06 56.6 78 42.3


User provided reference genes

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