Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.8e-76 288.1 148 100.0
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.1e-70 270.0 139 98.6
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 5.9e-61 237.7 138 88.4
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 4.5e-53 211.5 134 81.3
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.3e-52 209.9 134 80.6
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 5.5e-51 204.5 134 79.1
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 5.5e-51 204.5 134 79.1
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 7.2e-51 204.1 143 75.5
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 8.8e-49 197.2 139 72.7
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 4.1e-46 188.3 116 82.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 8.6e-44 180.6 129 71.3
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 3.0e-41 172.2 105 80.0
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 3.7e-39 165.2 125 71.2
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 6.2e-26 121.3 124 50.0
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 3.4e-24 115.5 119 48.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 4.4e-24 115.2 118 44.9
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.7e-23 113.2 116 48.3
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 2.9e-23 112.5 136 40.4
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.7e-23 112.1 152 37.5
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 6.4e-23 111.3 142 45.1
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 6.4e-23 111.3 142 45.1
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 6.4e-23 111.3 118 46.6
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.4e-22 110.2 142 45.1
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 9.2e-22 107.5 119 46.2
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.2e-21 107.1 121 43.0
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.7e-21 105.9 121 43.8
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 2.7e-21 105.9 105 46.7
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.7e-21 105.9 124 46.0
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.6e-21 105.1 115 42.6
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 6.0e-21 104.8 121 43.0
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 7.8e-21 104.4 89 64.0
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.8e-21 104.4 99 49.5
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.0e-20 104.0 121 44.6
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.0e-20 104.0 126 39.7
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.7e-20 103.2 99 48.5
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 1.7e-20 103.2 116 44.0
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.7e-20 103.2 143 37.8
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.7e-20 103.2 121 43.8
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 3.9e-20 102.1 121 43.0
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.1e-20 101.7 124 41.1
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 5.1e-20 101.7 135 40.7
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 6.6e-20 101.3 123 43.9
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 6.6e-20 101.3 119 43.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 8.6e-20 100.9 99 50.5
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-19 100.5 121 41.3
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.1e-19 100.5 137 38.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.5e-19 100.1 121 43.0
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.5e-19 100.1 124 39.5
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-19 100.1 120 43.3
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-19 99.8 124 39.5
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.9e-19 99.8 121 43.0
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.9e-19 99.8 121 43.0
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.5e-19 99.4 106 44.3
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.5e-19 99.4 106 45.3
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.3e-19 99.0 129 38.8
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 4.3e-19 98.6 129 41.9
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 4.3e-19 98.6 121 40.5
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 4.3e-19 98.6 106 45.3
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 4.3e-19 98.6 124 41.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.3e-19 98.6 125 39.2
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 5.6e-19 98.2 121 41.3
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 5.6e-19 98.2 127 37.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 7.3e-19 97.8 111 46.8
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.3e-19 97.8 121 40.5
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 9.5e-19 97.4 120 41.7
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 9.5e-19 97.4 125 41.6
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 9.5e-19 97.4 103 49.5
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.2e-18 97.1 120 42.5
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.2e-18 97.1 123 42.3
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.2e-18 97.1 106 44.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.6e-18 96.7 121 39.7
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.6e-18 96.7 114 44.7
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.6e-18 96.7 121 42.1
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.1e-18 96.3 117 44.4
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.8e-18 95.9 122 41.0
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 2.8e-18 95.9 117 39.3
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 3.6e-18 95.5 121 39.7
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 3.6e-18 95.5 121 41.3
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 4.7e-18 95.1 112 43.8
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 6.2e-18 94.7 121 39.7
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 6.2e-18 94.7 104 44.2
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 6.2e-18 94.7 121 39.7
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 8.1e-18 94.4 107 43.0
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.1e-17 94.0 102 46.1
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-17 94.0 108 41.7
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.4e-17 93.6 125 42.4
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.8e-17 93.2 121 38.8
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.3e-17 92.8 120 36.7
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.3e-17 92.8 146 37.7
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.3e-17 92.8 118 34.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.3e-17 92.8 117 41.9
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.3e-17 92.8 119 42.9
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.3e-17 92.8 106 42.5
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 4.0e-17 92.0 111 40.5
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 6.8e-17 91.3 124 38.7
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.2e-16 90.5 161 35.4
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.2e-16 90.5 138 34.8
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.2e-16 90.5 104 44.2
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.5e-16 90.1 120 35.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.6e-16 89.4 138 34.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 3.4e-16 89.0 140 38.6
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 3.4e-16 89.0 105 41.9
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 3.4e-16 89.0 130 35.4
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 5.8e-16 88.2 104 37.5
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 9.9e-16 87.4 121 38.8
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 9.9e-16 87.4 102 41.2
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.7e-15 86.7 96 45.8
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.7e-15 86.7 96 45.8
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 2.2e-15 86.3 113 35.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.7e-15 85.5 102 39.2
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 4.9e-15 85.1 122 37.7
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 6.4e-15 84.7 120 38.3
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 2.4e-14 82.8 101 42.6
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.2e-14 82.4 139 34.5
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 7.1e-14 81.3 104 40.4
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 2.7e-13 79.3 65 69.2
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 2.7e-13 79.3 65 69.2
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 7.8e-13 77.8 96 38.5
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-12 77.4 125 36.8
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.9e-12 75.5 92 41.3
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 5.1e-12 75.1 119 39.5
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 6.6e-12 74.7 104 36.5
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.5e-11 73.6 101 37.6
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.3e-11 72.4 165 29.1
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 3.3e-11 72.4 103 38.8
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.2e-10 70.5 121 38.8
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.1e-10 69.7 99 35.4
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 2.1e-10 69.7 114 36.8
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.6e-10 68.9 120 35.0
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.2e-10 68.2 99 35.4
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.4e-09 67.0 112 34.8
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.8e-09 66.6 88 37.5
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.7e-07 60.1 105 34.3
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.7e-07 60.1 81 40.7
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 2.2e-07 59.7 72 41.7
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 6.4e-07 58.2 58 37.9
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.9e-06 56.6 75 40.0


User provided reference genes

Program Settings