Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 5.8e-259 897.1 476 100.0
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 5.8e-259 897.1 476 100.0
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 1.0e-223 780.0 476 84.0
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 7.1e-217 757.3 480 81.9
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.9e-214 749.2 477 81.8
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 2.1e-213 745.7 476 81.5
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.1e-212 743.4 476 83.2
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 3.1e-212 741.9 476 81.1
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 3.1e-212 741.9 476 81.1
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 6.9e-212 740.7 477 82.0
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.0e-210 736.9 477 81.6
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 6.5e-210 734.2 480 83.3
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 6.0e-208 727.6 479 81.2
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.3e-181 640.2 427 76.6
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.7e-181 639.8 485 68.2
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 7.3e-153 544.7 487 56.7
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 3.0e-138 496.1 484 54.8
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.4e-135 487.3 435 57.7
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.2e-134 484.2 494 52.6
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 2.0e-134 483.4 424 58.3
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 9.8e-134 481.1 424 57.5
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.7e-133 480.3 495 53.7
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 3.7e-133 479.2 496 54.0
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 3.2e-132 476.1 426 58.0
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 4.1e-132 475.7 441 56.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 5.4e-132 475.3 438 56.4
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 6.0e-131 471.9 426 57.0
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.9e-130 469.2 405 58.5
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.6e-130 468.4 490 51.0
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 6.6e-130 468.4 484 54.1
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 8.6e-130 468.0 431 56.4
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 1.9e-129 466.8 398 58.5
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 7.3e-129 464.9 482 51.2
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.2e-128 464.2 439 56.7
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.1e-128 463.4 392 58.9
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 6.2e-128 461.8 399 58.6
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.3e-127 459.9 482 50.8
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.8e-127 458.4 489 51.1
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.2e-126 457.6 496 53.2
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 1.5e-126 457.2 431 54.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.5e-126 457.2 424 55.9
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.3e-125 454.1 429 56.6
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.1e-124 451.1 390 57.7
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 4.1e-124 449.1 428 54.2
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 4.1e-124 449.1 435 53.3
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.4e-124 448.7 426 56.6
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 5.4e-124 448.7 427 54.8
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 5.1e-122 442.2 487 48.7
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.9e-121 440.3 418 53.8
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 3.3e-121 439.5 437 51.3
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 4.3e-121 439.1 436 51.1
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 4.3e-121 439.1 428 52.8
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 4.3e-121 439.1 436 51.1
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 3.6e-120 436.0 423 53.7
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 6.2e-120 435.3 436 53.0
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 8.1e-120 434.9 408 62.0
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.1e-119 434.5 435 52.2
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 2.4e-119 433.3 431 54.1
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 3.1e-119 433.0 435 52.0
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 5.2e-119 432.2 491 50.1
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 5.2e-119 432.2 491 50.7
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.2e-118 431.0 432 52.8
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 3.4e-118 429.5 420 56.4
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.7e-117 427.2 380 55.8
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 2.2e-117 426.8 432 52.5
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 4.9e-117 425.6 489 49.3
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 8.4e-117 424.9 491 48.5
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.2e-115 421.0 431 52.0
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 6.0e-115 418.7 490 51.4
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 6.0e-115 418.7 397 53.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 4.3e-113 412.5 418 53.1
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 7.3e-113 411.8 429 49.4
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 1.8e-111 407.1 422 51.4
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 9.0e-111 404.8 352 60.2
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 3.4e-110 402.9 354 57.3
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.5e-110 402.5 356 58.1
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.5e-110 402.5 356 58.1
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 5.8e-110 402.1 405 52.1
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 5.8e-110 402.1 406 54.4
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 7.6e-110 401.7 459 47.7
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 9.9e-110 401.4 431 50.1
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 5.4e-108 395.6 463 49.9
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.6e-107 392.5 352 59.1
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.4e-103 380.9 409 53.3
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.2e-102 377.9 345 55.1
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 2.6e-102 376.7 412 54.9
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 2.9e-101 373.2 483 48.0
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.8e-101 372.9 401 47.9
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 8.7e-98 361.7 330 55.8
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.6e-96 357.5 357 53.8
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.4e-92 344.4 344 53.8
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 7.9e-91 338.6 423 43.3
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 9.3e-84 315.1 334 52.1
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 3.7e-80 303.1 263 61.2
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 7.2e-76 288.9 267 52.8
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.4e-63 248.1 425 36.7
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.0e-58 231.9 348 38.2
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.3e-56 224.9 442 32.6
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 2.4e-55 220.7 180 60.6
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 9.1e-55 218.8 356 36.2
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.9e-52 211.1 309 42.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 3.6e-51 206.8 193 53.9
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 5.9e-46 189.5 286 45.1
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 4.9e-40 169.9 361 33.2
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 5.9e-38 162.9 493 28.0
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 1.0e-29 135.6 190 41.1
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.4e-26 125.2 175 46.9
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.2e-25 122.1 172 44.2
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.0e-25 121.3 172 44.2
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 1.4e-10 72.0 102 42.2
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.4e-07 62.0 82 43.9
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 3.2e-07 60.8 87 41.4
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.1e-07 60.5 87 40.2
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 5.4e-07 60.1 62 46.8
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 7.1e-07 59.7 58 48.3
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.2e-06 58.9 85 40.0
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 2.1e-06 58.2 61 50.8
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 2.7e-06 57.8 81 39.5


User provided reference genes

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