Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 1.9e-151 539.3 290 100.0
Thhalv10023602m.g Eutrema salsugineum HOM05D006966 ORTHO05D008111 1.7e-91 340.1 318 62.6
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 1.2e-86 323.9 317 62.5
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 5.2e-69 265.4 319 57.7
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 6.5e-64 248.4 302 59.3
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 2.2e-59 233.4 267 59.2
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 1.0e-56 224.6 315 53.0
Aa31LG2G11900 Aethionema arabicum HOM05D006966 ORTHO05D008111 5.0e-40 169.1 262 48.5
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 4.7e-22 109.4 123 50.4
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 2.0e-20 104.0 127 52.0
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.4e-20 102.8 155 43.9
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 4.4e-20 102.8 155 40.6
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 9.9e-20 101.7 146 45.9
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 9.9e-20 101.7 161 42.9
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 9.9e-20 101.7 130 50.8
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 1.7e-19 100.9 139 46.8
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.7e-19 100.9 139 46.8
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 1.7e-19 100.9 139 46.8
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 2.2e-19 100.5 119 50.4
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 3.8e-19 99.8 156 43.6
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.4e-19 99.0 139 46.8
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 6.4e-19 99.0 139 46.8
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 1.1e-18 98.2 149 40.9
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 1.9e-18 97.4 122 49.2
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 2.4e-18 97.1 120 49.2
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 2.4e-18 97.1 130 45.4
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 5.4e-18 95.9 119 47.9
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 7.1e-18 95.5 124 47.6
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 9.3e-18 95.1 116 48.3
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.2e-17 94.7 125 48.0
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 1.2e-17 94.7 120 47.5
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 1.2e-17 94.7 154 39.0
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 1.6e-17 94.4 151 43.0
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 2.1e-17 94.0 130 48.5
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 2.7e-17 93.6 134 45.5
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 3.5e-17 93.2 130 43.1
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 4.6e-17 92.8 73 61.6
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 4.6e-17 92.8 121 48.8
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 4.6e-17 92.8 126 47.6
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 4.6e-17 92.8 127 40.9
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 4.6e-17 92.8 131 41.2
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 6.0e-17 92.4 182 35.7
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 7.8e-17 92.0 222 35.1
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 1.0e-16 91.7 158 37.3
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 1.3e-16 91.3 126 40.5
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 1.3e-16 91.3 126 43.7
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 1.7e-16 90.9 116 47.4
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 1.7e-16 90.9 124 44.4
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 1.7e-16 90.9 121 42.1
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 1.7e-16 90.9 143 43.4
Sc09g0003390 Simmondsia chinensis HOM05D006966 ORTHO05D008111 2.3e-16 90.5 118 46.6
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 3.0e-16 90.1 146 43.8
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 3.9e-16 89.7 130 45.4
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.9e-16 89.7 162 36.4
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 5.1e-16 89.4 163 36.2
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 6.6e-16 89.0 119 45.4
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 6.6e-16 89.0 219 34.7
QL03p004162 Quercus lobata HOM05D006966 ORTHO05D008111 6.6e-16 89.0 133 43.6
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 8.7e-16 88.6 139 43.9
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 1.1e-15 88.2 129 41.9
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 1.5e-15 87.8 152 40.1
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 1.9e-15 87.4 146 40.4
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 2.5e-15 87.0 272 31.2
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 4.3e-15 86.3 124 44.4
Sabra13G0027800 Salix brachista HOM05D006966 ORTHO05D008111 5.6e-15 85.9 150 42.7
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 2.8e-14 83.6 181 34.8
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 2.8e-14 83.6 135 40.7
THA.LOC104823738 Tarenaya hassleriana HOM05D006966 ORTHO05D008111 2.8e-14 83.6 216 36.1
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 2.8e-14 83.6 129 44.2
Glyma.20G231100 Glycine max HOM05D006966 ORTHO05D008111 3.6e-14 83.2 137 38.7
TAR362G0564 Trochodendron aralioides HOM05D006966 ORTHO05D008111 6.2e-14 82.4 122 38.5
Psat6g148600 Pisum sativum HOM05D006966 ORTHO05D008111 1.1e-13 81.6 179 34.1
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 1.8e-13 80.9 156 34.0
Haze_04244 Corylus avellana HOM05D006966 ORTHO05D008111 1.8e-13 80.9 113 41.6
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 1.8e-13 80.9 169 34.3
Sc16g0008300 Simmondsia chinensis HOM05D006966 ORTHO05D008111 1.8e-13 80.9 159 35.8
Cfa006536 Carpinus fangiana HOM05D006966 ORTHO05D008111 2.4e-13 80.5 131 40.5
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 2.4e-13 80.5 120 47.5
TWI36G1607 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 5.3e-13 79.3 55 67.3
Gohir.A11G262300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 6.9e-13 79.0 203 35.5
TWI12G1291 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 9.0e-13 78.6 217 29.5
Glyma.10G157600 Glycine max HOM05D006966 ORTHO05D008111 1.2e-12 78.2 193 34.2
PSO210G4305 Papaver somniferum HOM05D006966 ORTHO05D008111 2.0e-12 77.4 164 37.2
Gohir.D11G272300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.4e-12 76.6 129 41.1
Sed0007833 Sechium edule HOM05D006966 ORTHO05D008111 3.4e-12 76.6 182 34.1
Gorai.007G293600 Gossypium raimondii HOM05D006966 ORTHO05D008111 4.5e-12 76.3 128 42.2
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 9.9e-12 75.1 158 35.4
PSO832G1078 Papaver somniferum HOM05D006966 ORTHO05D008111 9.9e-12 75.1 144 40.3
CiPaw.08G167600 Carya illinoinensis HOM05D006966 ORTHO05D008111 2.2e-11 73.9 100 45.0
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.9e-11 73.6 117 39.3
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 4.9e-11 72.8 134 35.8
DCAR_022251 Daucus carota HOM05D006966 ORTHO05D008111 4.9e-11 72.8 149 36.9
Aqoxy2G03182 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 8.4e-11 72.0 126 41.3
CDE11G0954 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 8.4e-11 72.0 118 38.1
Ah.04g159860 Amaranthus hybridus HOM05D006966 ORTHO05D008111 1.9e-10 70.9 118 35.6
CiPaw.07G014000 Carya illinoinensis HOM05D006966 ORTHO05D008111 1.9e-10 70.9 146 34.9
Manes.08G123800 Manihot esculenta HOM05D006966 ORTHO05D008111 1.9e-10 70.9 113 42.5
VMungo0720G1138 Vigna mungo HOM05D006966 ORTHO05D008111 1.9e-10 70.9 146 34.2
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 2.4e-10 70.5 141 35.5
TPR.G2724 Trifolium pratense HOM05D006966 ORTHO05D008111 2.4e-10 70.5 110 42.7
Aqoxy5G00570 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 4.2e-10 69.7 131 38.9
Medtr1g082320 Medicago truncatula HOM05D006966 ORTHO05D008111 4.2e-10 69.7 54 55.6
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 5.4e-10 69.3 150 33.3
Ah.06g190190 Amaranthus hybridus HOM05D006966 ORTHO05D008111 1.6e-09 67.8 120 36.7
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.6e-09 67.8 129 37.2
Nn4g26120 Nelumbo nucifera HOM05D006966 ORTHO05D008111 1.6e-09 67.8 119 35.3
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.6e-09 67.8 118 39.8
DCAR_003308 Daucus carota HOM05D006966 ORTHO05D008111 2.7e-09 67.0 135 37.8
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 2.7e-09 67.0 170 34.1
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 4.6e-09 66.2 131 32.8
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 4.6e-09 66.2 130 37.7
EL10Ac4g09297 Beta vulgaris HOM05D036395 ORTHO05D008111 6.0e-09 65.9 121 34.7
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 6.0e-09 65.9 196 29.1
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 6.0e-09 65.9 166 34.3
COL.COLO4_13529 Corchorus olitorius HOM05D006966 ORTHO05D008111 1.0e-08 65.1 162 35.8
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 2.3e-08 63.9 135 31.9
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 2.3e-08 63.9 129 33.3
Sopen00g012390 Solanum pennellii HOM05D006966 ORTHO05D008111 2.3e-08 63.9 102 38.2
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 3.0e-08 63.5 133 34.6
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 3.9e-08 63.2 173 31.8
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 6.7e-08 62.4 124 36.3
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.1e-07 61.6 195 27.7
Peaxi162Scf00071g00710 Petunia axillaris HOM05D006966 ORTHO05D008111 1.1e-07 61.6 120 36.7
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.1e-07 61.6 132 34.1
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 1.9e-07 60.8 135 33.3
Ca_10083_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 2.5e-07 60.5 39 69.2
Dinv11270 Davidia involucrata HOM05D006966 ORTHO05D017198 3.3e-07 60.1 168 28.0
AL6G33410 Arabidopsis lyrata HOM05D004622 ORTHO05D005431 5.6e-07 59.3 127 34.6
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 7.4e-07 58.9 127 36.2
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 7.4e-07 58.9 162 29.6
SEGI_39458 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 7.4e-07 58.9 117 35.0
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 7.4e-07 58.9 115 33.9
AUR62000853 Chenopodium quinoa HOM05D036395 ORTHO05D008111 9.6e-07 58.5 50 54.0
ATR0665G217 Amborella trichopoda HOM05D001105 ORTHO05D003643 1.3e-06 58.2 114 36.8
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.6e-06 57.8 166 28.9
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 2.1e-06 57.4 162 29.0
SEGI_38791 Sequoiadendron giganteum HOM05D004622 ORTHO05D005431 2.1e-06 57.4 143 34.3
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 2.8e-06 57.0 136 32.4
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 3.7e-06 56.6 133 37.6
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 4.8e-06 56.2 176 27.8
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 4.8e-06 56.2 115 33.0
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 6.2e-06 55.8 126 36.5
Carub.0006s2014 Capsella rubella HOM05D004622 ORTHO05D005431 6.2e-06 55.8 133 35.3


User provided reference genes

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