Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.5e-181 639.4 320 100.0
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 5.2e-147 524.6 324 82.4
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 9.2e-144 513.8 323 81.4
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.2e-140 503.4 342 77.2
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.8e-139 499.6 310 81.6
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.8e-139 499.6 310 81.6
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 4.9e-137 491.5 339 76.4
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 3.9e-134 481.9 324 76.5
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 3.3e-133 478.8 336 73.5
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 4.0e-131 471.9 349 71.9
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 5.2e-131 471.5 343 72.6
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 6.0e-119 431.4 335 67.5
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 9.0e-99 364.4 254 70.5
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 9.0e-99 364.4 319 61.1
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.0e-97 360.9 234 70.5
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 8.5e-97 357.8 317 60.6
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 1.9e-96 356.7 323 58.2
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 3.2e-96 355.9 318 59.7
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 9.3e-96 354.4 320 57.8
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.6e-95 353.6 227 73.6
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.6e-95 353.6 315 59.0
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 2.7e-95 352.8 327 58.7
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 7.9e-95 351.3 325 55.4
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 7.9e-95 351.3 294 60.5
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.0e-94 350.9 318 57.5
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 1.8e-94 350.1 323 58.2
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 2.3e-94 349.7 216 75.0
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 2.3e-94 349.7 296 61.1
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 2.3e-94 349.7 315 58.7
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 3.9e-94 349.0 316 58.5
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 3.9e-94 349.0 318 56.3
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 5.1e-94 348.6 267 64.8
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 5.1e-94 348.6 315 58.4
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 6.7e-94 348.2 291 61.9
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 6.7e-94 348.2 262 64.5
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.1e-93 347.4 319 58.9
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 1.9e-93 346.7 214 74.3
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.9e-93 346.7 321 57.6
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.9e-93 346.7 235 70.6
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.7e-93 344.4 222 72.5
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.3e-92 344.0 277 63.5
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.6e-92 343.6 292 61.0
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.2e-92 343.2 259 66.0
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.8e-92 342.8 214 75.2
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.7e-92 342.4 253 65.6
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 3.7e-92 342.4 316 58.9
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 3.7e-92 342.4 288 60.4
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 3.7e-92 342.4 244 67.6
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 4.8e-92 342.0 217 72.8
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 4.8e-92 342.0 314 56.4
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.3e-92 341.7 298 59.1
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 1.1e-91 340.9 217 73.7
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.1e-91 339.0 226 70.8
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 4.1e-91 339.0 219 71.2
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 6.9e-91 338.2 236 68.6
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 6.9e-91 338.2 226 69.9
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 6.9e-91 338.2 219 70.8
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 9.1e-91 337.8 240 65.8
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 9.1e-91 337.8 261 65.5
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.5e-90 337.0 223 70.0
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.5e-90 337.0 220 70.5
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-90 337.0 259 64.9
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.5e-90 337.0 300 58.3
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 2.0e-90 336.7 301 57.5
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.6e-90 336.3 220 71.4
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 2.6e-90 336.3 316 55.1
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.6e-90 336.3 254 64.2
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 3.4e-90 335.9 254 64.6
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 4.5e-90 335.5 288 58.3
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 4.5e-90 335.5 245 67.3
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 4.5e-90 335.5 241 66.0
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.7e-89 333.6 303 56.1
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.7e-89 333.6 233 67.4
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 5.0e-89 332.0 237 67.5
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 5.0e-89 332.0 313 56.2
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 6.5e-89 331.6 220 70.5
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 8.5e-89 331.3 319 55.2
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 4.2e-88 328.9 221 69.2
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 7.2e-88 328.2 319 56.4
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 1.2e-87 327.4 222 70.7
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 1.6e-87 327.0 229 67.7
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 2.1e-87 326.6 242 63.6
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 2.1e-87 326.6 220 69.5
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.6e-87 325.9 209 72.7
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 3.6e-87 325.9 214 68.7
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 1.4e-86 323.9 253 62.5
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.3e-86 323.2 237 66.7
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.3e-86 323.2 230 67.0
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 3.9e-86 322.4 233 68.2
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.1e-85 320.9 223 68.2
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.5e-85 320.5 255 63.5
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 5.7e-85 318.5 213 69.5
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 9.7e-85 317.8 251 62.2
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 1.3e-84 317.4 343 51.3
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.3e-84 317.4 265 61.9
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 4.8e-84 315.5 216 66.7
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 6.3e-84 315.1 203 70.9
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 8.2e-84 314.7 324 52.5
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 8.2e-84 314.7 235 63.4
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 8.2e-84 314.7 286 55.9
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 8.2e-84 314.7 222 67.6
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 2.4e-83 313.2 178 76.4
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.1e-83 312.8 233 64.8
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 6.9e-83 311.6 242 63.6
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.5e-82 308.9 326 51.8
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.3e-81 307.4 216 67.1
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.0e-81 305.4 214 68.2
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.8e-78 294.7 233 64.4
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.3e-75 285.4 380 42.6
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.2e-71 274.2 193 68.4
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 1.5e-69 267.3 199 65.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 9.7e-69 264.6 222 61.3
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.7e-68 262.7 192 65.6
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.8e-68 262.3 241 57.3
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 2.4e-67 260.0 302 49.7
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 9.1e-67 258.1 212 61.8
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 6.5e-65 251.9 330 45.2
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 8.5e-65 251.5 212 57.1
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.4e-59 233.4 126 76.2
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 5.4e-59 232.3 296 46.3
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.3e-57 226.9 270 48.9
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 8.6e-57 224.9 225 50.7
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.7e-55 219.2 122 80.3
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 8.0e-55 218.4 123 75.6
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 2.3e-54 216.9 165 60.0
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 5.2e-54 215.7 222 51.8
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.7e-52 209.5 132 72.7
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 1.1e-51 208.0 170 59.4
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 9.8e-45 184.9 187 56.1
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 2.2e-44 183.7 164 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 7.0e-43 178.7 126 57.9
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.3e-41 174.5 166 56.0
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 1.3e-36 157.9 181 41.4
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.6e-32 142.5 99 67.7
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 3.1e-30 136.7 84 72.6
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.4e-22 111.3 133 48.1
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 2.1e-10 70.9 106 50.0
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.7e-09 67.8 110 44.5
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 8.7e-09 65.5 32 84.4
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.6e-07 61.2 54 61.1


User provided reference genes

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