Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.0e-225 785.4 394 100.0
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 4.7e-190 667.9 447 78.3
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.0e-189 666.8 447 78.1
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.0e-189 666.8 447 78.1
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.0e-189 666.8 446 78.3
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 5.2e-189 664.5 447 77.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 5.2e-189 664.5 447 77.9
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.0e-188 662.5 447 77.6
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 2.6e-188 662.1 447 77.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 7.5e-188 660.6 446 76.9
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.7e-187 659.4 446 76.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.4e-186 655.6 446 76.9
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 6.4e-171 604.4 448 71.4
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.5e-169 598.6 448 69.4
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.4e-164 582.0 407 74.9
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.6e-150 536.6 448 61.2
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 4.5e-148 528.5 449 61.2
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 3.8e-147 525.4 446 61.0
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.9e-147 525.0 449 60.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 6.4e-147 524.6 449 60.6
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.2e-146 522.3 449 60.6
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 7.9e-145 517.7 449 61.0
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.0e-144 517.3 445 60.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.3e-144 516.9 448 60.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.1e-143 513.8 448 59.8
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 3.7e-142 508.8 448 60.0
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.4e-141 506.1 448 59.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 4.0e-141 505.4 448 59.8
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.2e-140 503.8 436 58.9
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 6.4e-139 498.0 448 58.0
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.9e-138 496.5 448 58.7
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.9e-138 496.5 448 58.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 4.2e-138 495.4 448 58.5
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 5.5e-138 495.0 450 58.9
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 5.5e-138 495.0 448 57.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 9.3e-138 494.2 448 62.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.3e-138 494.2 448 57.8
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 9.3e-138 494.2 448 57.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.6e-137 493.4 448 58.3
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.0e-136 490.7 446 57.6
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.0e-136 489.2 456 56.6
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 3.9e-136 488.8 472 55.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.1e-136 488.4 446 57.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 6.7e-136 488.0 446 57.0
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.9e-135 486.5 447 57.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.3e-135 485.3 446 56.5
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 7.4e-135 484.6 438 57.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 7.4e-135 484.6 448 56.9
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 9.6e-135 484.2 449 56.3
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.6e-134 483.4 409 62.8
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 6.2e-134 481.5 446 56.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.1e-133 480.7 452 57.5
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.4e-133 480.3 449 56.3
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.4e-133 480.3 449 57.9
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 3.1e-133 479.2 445 56.9
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 4.0e-133 478.8 448 56.9
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 6.9e-133 478.0 447 57.0
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 6.9e-133 478.0 446 57.0
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 9.0e-133 477.6 448 56.2
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.0e-132 476.5 447 55.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.0e-132 476.5 446 55.8
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.6e-132 476.1 460 55.2
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.4e-132 475.7 448 56.0
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 7.6e-132 474.6 448 55.8
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.0e-131 474.2 447 55.7
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.3e-131 473.8 438 58.0
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.7e-131 473.4 446 57.2
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.2e-131 473.0 446 56.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.9e-131 472.6 447 55.9
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.9e-131 472.6 446 56.5
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.2e-129 467.2 448 55.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.2e-129 467.2 447 57.3
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.6e-129 466.8 449 55.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.6e-129 466.8 448 55.6
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.7e-129 466.1 447 56.4
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 4.6e-129 465.3 448 55.4
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 2.3e-128 463.0 412 57.5
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-128 463.0 446 53.8
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 8.7e-128 461.1 448 55.4
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-127 460.7 500 50.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.5e-127 460.3 448 54.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-127 460.3 421 58.2
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-127 460.3 421 58.2
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 5.7e-127 458.4 438 55.3
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 7.4e-127 458.0 536 49.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.1e-125 454.1 435 55.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.4e-125 453.0 446 52.7
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 6.9e-125 451.4 438 54.6
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.0e-124 449.9 461 53.1
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.9e-123 446.0 441 54.6
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.1e-122 444.1 450 52.7
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.4e-122 443.7 454 51.1
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.5e-122 441.8 453 53.0
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.6e-121 440.3 458 50.2
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.1e-121 439.9 456 52.2
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.1e-121 439.9 436 53.4
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.3e-120 437.2 436 53.4
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.8e-120 436.8 436 54.6
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.5e-119 433.7 446 54.0
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 1.5e-119 433.7 434 53.5
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 3.7e-118 429.1 445 53.0
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.0e-116 423.3 316 66.5
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 6.5e-115 418.3 438 52.1
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 8.5e-115 417.9 446 50.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-114 417.5 332 63.3
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 5.1e-112 408.7 477 48.4
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-110 404.1 484 51.0
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 4.8e-110 402.1 424 50.9
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-109 401.0 371 56.3
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.2e-100 370.9 461 44.5
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 9.4e-98 361.3 288 62.2
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 5.7e-95 352.1 375 51.7
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.2e-89 334.3 287 59.6
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.0e-87 327.0 327 54.1
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.6e-84 317.4 314 55.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-82 311.2 437 41.2
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 7.2e-82 308.5 467 40.5
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.0e-80 304.7 431 40.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.1e-64 250.0 280 50.7
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.1e-56 224.9 359 42.1
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.3e-51 207.2 334 39.2
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.0e-51 206.8 444 32.4
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 4.0e-48 196.4 456 31.1
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 5.8e-47 192.6 178 62.4
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.4e-45 186.0 101 94.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 7.1e-45 185.7 157 59.2
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 4.4e-39 166.4 466 27.7
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 4.9e-38 162.9 160 60.0
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 8.7e-35 152.1 206 39.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 3.8e-30 136.7 440 29.3
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 3.3e-26 123.6 108 58.3
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.8e-14 83.6 52 73.1
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 4.9e-14 83.2 102 40.2
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 4.3e-10 70.1 174 28.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.3e-09 68.6 48 68.8
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.7e-06 58.2 71 52.1


User provided reference genes

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