Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.7e-177 624.4 309 100.0
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 2.7e-172 608.6 305 97.7
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 7.7e-172 607.1 305 97.0
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 2.9e-171 605.1 305 97.0
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 2.9e-171 605.1 305 96.7
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 6.5e-171 604.0 305 96.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 1.1e-170 603.2 305 97.0
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 1.9e-170 602.4 305 96.4
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 1.9e-170 602.4 305 96.4
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 1.9e-170 602.4 305 96.4
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 2.5e-170 602.1 305 96.1
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 3.2e-170 601.7 305 96.1
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 4.2e-170 601.3 305 96.4
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 5.5e-170 600.9 305 95.7
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 9.4e-170 600.1 307 95.4
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 6.3e-166 587.4 305 92.8
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 5.4e-165 584.3 305 92.8
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 3.6e-161 571.6 305 89.8
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 4.7e-161 571.2 305 89.8
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 8.0e-161 570.5 305 90.2
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.0e-160 570.1 305 89.8
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 1.4e-160 569.7 305 89.5
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 2.3e-160 568.9 305 88.9
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 2.3e-160 568.9 305 89.8
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 3.0e-160 568.5 305 89.5
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 3.0e-160 568.5 305 90.2
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.0e-160 568.2 305 89.5
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 6.8e-160 567.4 305 89.2
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 8.9e-160 567.0 305 88.9
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 8.9e-160 567.0 305 88.5
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 1.2e-159 566.6 305 89.2
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.2e-159 566.6 305 89.2
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 1.5e-159 566.2 305 89.2
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 2.0e-159 565.8 305 89.2
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 2.0e-159 565.8 305 89.2
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 2.0e-159 565.8 305 89.2
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 2.0e-159 565.8 307 87.9
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 2.6e-159 565.5 305 88.5
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 2.6e-159 565.5 305 89.2
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 2.6e-159 565.5 305 89.2
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 2.6e-159 565.5 305 88.2
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 2.6e-159 565.5 305 89.2
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 4.4e-159 564.7 305 88.5
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 5.7e-159 564.3 305 88.5
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 7.5e-159 563.9 305 88.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 7.5e-159 563.9 305 88.5
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 9.8e-159 563.5 305 88.5
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 1.3e-158 563.1 305 88.9
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.7e-158 562.8 305 88.5
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 1.7e-158 562.8 305 87.9
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 2.8e-158 562.0 305 88.2
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 2.8e-158 562.0 305 88.9
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 2.8e-158 562.0 305 87.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 2.8e-158 562.0 305 88.2
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 3.7e-158 561.6 305 87.5
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 3.7e-158 561.6 305 87.9
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 4.9e-158 561.2 305 88.5
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 4.9e-158 561.2 305 87.5
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 6.3e-158 560.8 305 87.9
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 8.3e-158 560.5 305 87.9
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 8.3e-158 560.5 305 87.2
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 1.1e-157 560.1 305 86.9
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 1.1e-157 560.1 305 87.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 1.4e-157 559.7 305 88.5
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.4e-157 559.7 305 87.2
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 1.4e-157 559.7 305 87.5
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 1.4e-157 559.7 305 88.5
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 1.8e-157 559.3 305 87.5
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 2.4e-157 558.9 305 88.2
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 2.4e-157 558.9 305 87.9
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.2e-157 558.5 305 87.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 3.2e-157 558.5 305 87.9
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 3.2e-157 558.5 305 87.5
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 4.1e-157 558.1 305 87.9
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 5.4e-157 557.8 305 86.9
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 5.4e-157 557.8 305 87.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 5.4e-157 557.8 305 87.2
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 5.4e-157 557.8 305 86.6
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 5.4e-157 557.8 305 86.6
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 7.0e-157 557.4 305 86.9
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 7.0e-157 557.4 305 86.6
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 7.0e-157 557.4 305 85.9
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 9.2e-157 557.0 305 87.5
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 9.2e-157 557.0 305 87.9
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 1.2e-156 556.6 305 87.9
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.2e-156 556.6 305 87.5
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 1.2e-156 556.6 305 86.2
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 1.6e-156 556.2 305 86.6
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 1.6e-156 556.2 305 87.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 2.0e-156 555.8 305 86.9
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 3.5e-156 555.1 305 85.9
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 3.5e-156 555.1 305 87.9
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 4.5e-156 554.7 305 86.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 4.5e-156 554.7 305 86.6
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 7.8e-156 553.9 305 87.5
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 7.8e-156 553.9 305 87.2
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 1.0e-155 553.5 305 86.6
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.0e-155 553.5 305 87.2
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 1.3e-155 553.1 305 85.6
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 1.3e-155 553.1 305 86.9
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 1.3e-155 553.1 305 87.2
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 1.3e-155 553.1 305 87.5
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 1.3e-155 553.1 305 86.6
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 1.3e-155 553.1 305 87.9
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 1.7e-155 552.7 305 86.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 1.7e-155 552.7 305 85.2
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 2.9e-155 552.0 305 87.2
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 1.5e-154 549.7 305 85.6
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 2.1e-153 545.8 308 84.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 3.6e-153 545.0 305 85.2
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 1.8e-152 542.7 305 85.9
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 4.0e-152 541.6 349 77.1
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 4.9e-150 534.6 301 84.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 1.1e-149 533.5 288 87.5
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 7.5e-143 510.8 305 80.7
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.0e-140 501.1 306 76.8
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.0e-140 501.1 306 76.8
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.0e-139 500.4 306 76.8
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.9e-138 496.1 306 75.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.3e-138 495.0 306 75.5
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 5.6e-138 494.6 305 79.3
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.6e-137 493.0 305 79.3
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 2.6e-135 485.7 305 78.0
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 2.6e-135 485.7 306 72.9
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 5.8e-135 484.6 306 74.2
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.2e-134 482.6 305 78.4
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 7.3e-130 467.6 301 77.4
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 7.8e-124 447.6 305 72.8
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.5e-122 442.6 619 44.1
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 4.8e-121 438.3 306 67.3
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.2e-118 429.5 305 68.9
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 6.0e-116 421.4 304 65.8
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.2e-108 397.1 304 64.5
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.3e-106 388.7 312 58.7
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 1.1e-98 364.0 180 96.7
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 5.3e-88 328.6 326 49.1
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.0e-86 324.3 158 98.7
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.1e-68 261.9 223 63.2
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 6.8e-59 231.9 260 51.5
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.7e-49 199.5 126 73.8
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 2.7e-39 166.8 82 95.1
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 1.2e-36 157.9 101 74.3
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.2e-34 151.4 73 95.9
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.9e-32 144.1 122 60.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 6.6e-30 135.6 83 78.3
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 8.1e-28 128.6 105 61.9
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.1e-27 128.3 99 63.6
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-27 127.9 61 95.1
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.4e-24 117.9 99 63.6
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 7.1e-24 115.5 62 83.9
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.6e-23 114.4 62 83.9
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-21 107.8 53 90.6
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 3.0e-14 83.6 56 73.2
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 5.1e-14 82.8 54 66.7
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 2.8e-12 77.0 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 8.1e-12 75.5 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 6.9e-11 72.4 38 89.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.2e-07 61.6 150 27.3
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 2.3e-06 57.4 68 45.6
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.0e-06 57.0 113 38.1


User provided reference genes

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