Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 5.2e-125 451.1 226 100.0
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.2e-113 413.3 227 92.1
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 7.8e-113 410.6 227 92.1
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.7e-112 409.5 226 90.3
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.3e-112 409.1 228 92.1
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 2.3e-112 409.1 227 91.6
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 6.6e-112 407.5 225 91.1
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 1.0e-109 400.2 226 87.2
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 4.0e-109 398.3 226 86.7
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 4.6e-105 384.8 222 85.6
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 8.6e-104 380.6 223 85.7
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.8e-101 372.9 223 80.3
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 4.1e-98 361.7 222 77.5
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.3e-91 340.1 224 72.3
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.6e-89 333.2 224 73.2
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 1.3e-88 330.1 227 70.0
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.9e-87 326.2 226 70.8
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 9.6e-87 323.9 226 71.2
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 2.8e-86 322.4 226 69.9
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 2.8e-86 322.4 224 69.2
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 4.7e-86 321.6 226 69.5
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 4.7e-86 321.6 225 69.8
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.1e-85 320.5 224 69.6
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.1e-85 320.5 247 64.8
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.8e-85 319.7 229 66.8
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 5.2e-85 318.2 218 70.2
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 8.9e-85 317.4 227 68.7
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 8.9e-85 317.4 227 67.0
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 8.9e-85 317.4 227 68.3
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 3.4e-84 315.5 224 68.3
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 7.6e-84 314.3 224 68.3
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 2.2e-83 312.8 229 68.1
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 2.2e-83 312.8 227 67.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 2.2e-83 312.8 228 65.4
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 2.9e-83 312.4 228 64.5
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 6.4e-83 311.2 225 67.1
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 8.4e-83 310.8 225 67.6
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 5.4e-82 308.1 228 67.5
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 9.3e-82 307.4 223 65.9
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 9.3e-82 307.4 229 65.9
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 1.6e-81 306.6 232 65.5
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 2.7e-81 305.8 241 63.5
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 2.7e-81 305.8 220 67.7
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 3.5e-81 305.4 227 65.2
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 3.5e-81 305.4 224 65.2
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 7.8e-81 304.3 224 65.2
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.7e-80 303.1 225 65.8
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.7e-80 303.1 230 65.7
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 1.7e-80 303.1 220 65.9
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 2.3e-80 302.8 223 63.7
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 3.9e-80 302.0 224 66.1
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 6.6e-80 301.2 224 65.2
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 8.7e-80 300.8 222 66.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.5e-79 300.1 227 64.8
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 2.5e-79 299.3 220 66.8
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 3.3e-79 298.9 230 65.2
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 7.3e-79 297.7 228 64.5
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 9.6e-79 297.4 221 66.1
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 6.2e-78 294.7 229 61.6
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 8.1e-78 294.3 220 64.5
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.1e-77 293.9 227 61.7
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 1.1e-77 293.9 224 65.6
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.1e-77 293.9 229 63.3
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 4.0e-77 292.0 220 63.6
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 5.3e-77 291.6 220 65.0
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.3e-75 287.0 228 64.9
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 1.7e-75 286.6 224 63.8
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.2e-75 286.2 229 60.7
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 3.8e-75 285.4 229 61.1
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 4.9e-75 285.0 208 67.8
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 6.4e-75 284.6 230 64.3
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-74 283.5 229 59.8
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 3.2e-74 282.3 220 63.2
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.2e-73 280.4 222 61.7
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 2.1e-73 279.6 223 61.0
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.6e-73 278.5 220 62.7
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 7.9e-73 277.7 230 62.2
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 1.0e-72 277.3 220 61.4
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 9.6e-71 270.8 248 58.5
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.8e-70 269.2 223 60.5
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.2e-70 268.1 248 58.1
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.3e-69 265.0 248 57.3
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 9.9e-68 260.8 230 58.3
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 9.3e-66 254.2 230 57.8
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 7.9e-65 251.1 162 71.0
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 1.1e-63 247.3 218 58.3
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 1.5e-63 246.9 238 52.9
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 3.7e-62 242.3 220 55.5
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 1.8e-61 240.0 162 69.1
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 1.3e-59 233.8 122 93.4
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 4.9e-59 231.9 122 92.6
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 8.4e-59 231.1 160 68.1
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 1.2e-57 227.3 140 74.3
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 2.7e-57 226.1 220 54.5
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 7.9e-57 224.6 235 52.3
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 1.3e-56 223.8 155 67.7
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 6.7e-56 221.5 235 51.9
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.1e-55 220.7 170 62.9
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 1.5e-55 220.3 175 62.3
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 8.2e-54 214.5 173 60.7
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 9.0e-53 211.1 166 62.7
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 3.4e-52 209.1 217 51.2
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.3e-51 207.2 165 62.4
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 6.5e-51 204.9 224 48.2
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.5e-50 203.0 222 47.7
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 2.7e-49 199.5 166 57.2
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 2.3e-48 196.4 222 47.7
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 1.1e-39 167.5 177 50.3
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 4.3e-39 165.6 125 64.8
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 2.2e-38 163.3 142 56.3
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 5.0e-35 152.1 107 65.4
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 5.5e-34 148.7 145 57.2
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.1e-33 146.7 129 59.7
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 1.2e-28 131.0 144 51.4
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 6.5e-27 125.2 218 39.0
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.5e-26 124.0 90 68.9
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.5e-26 124.0 90 68.9
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 3.0e-24 116.3 106 55.7
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 5.7e-15 85.5 62 62.9
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 6.3e-14 82.0 57 68.4
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 6.3e-14 82.0 57 68.4
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.4e-08 64.3 47 63.8
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 1.7e-06 57.4 196 26.0
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 4.9e-06 55.8 30 76.7


User provided reference genes

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