Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.3e-74 281.2 138 100.0
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.6e-71 271.9 141 96.5
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.6e-68 262.7 141 92.2
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.8e-67 259.2 141 89.4
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.3e-67 258.8 141 90.8
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.3e-67 258.8 141 90.8
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 5.1e-67 257.7 141 90.1
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 6.7e-67 257.3 141 90.1
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 8.8e-67 256.9 141 90.8
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 1.1e-66 256.5 141 89.4
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 1.1e-66 256.5 141 89.4
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.5e-66 256.1 138 89.1
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.5e-66 256.1 138 89.1
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.5e-66 256.1 138 89.1
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.5e-66 256.1 138 89.1
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 2.0e-66 255.8 141 90.1
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 4.3e-66 254.6 141 89.4
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 5.7e-66 254.2 141 88.7
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 5.7e-66 254.2 141 88.7
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 7.4e-66 253.8 141 89.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 3.7e-65 251.5 140 87.9
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 3.7e-65 251.5 140 87.9
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 3.7e-65 251.5 140 87.9
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.1e-64 250.0 137 89.1
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.1e-64 250.0 140 87.1
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.4e-64 249.6 140 86.4
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 2.4e-64 248.8 137 89.1
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 2.4e-64 248.8 140 86.4
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.4e-64 248.8 137 88.3
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 3.1e-64 248.4 140 86.4
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 5.3e-64 247.7 137 87.6
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 5.3e-64 247.7 137 87.6
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 9.1e-64 246.9 137 87.6
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 9.1e-64 246.9 140 85.0
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 9.1e-64 246.9 137 86.9
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 88.3
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 87.6
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 87.6
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 87.6
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 87.6
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 84.3
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 84.3
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 87.6
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.2e-63 246.5 137 87.6
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.5e-63 246.1 140 85.7
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.5e-63 246.1 137 87.6
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.5e-63 246.1 137 88.3
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.5e-63 246.1 141 87.2
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.0e-63 245.7 137 87.6
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 2.0e-63 245.7 140 84.3
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.6e-63 245.4 137 86.9
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.6e-63 245.4 137 87.6
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 2.6e-63 245.4 137 87.6
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 2.6e-63 245.4 137 87.6
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 2.6e-63 245.4 137 87.6
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 2.6e-63 245.4 137 86.9
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 4.5e-63 244.6 137 86.9
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 4.5e-63 244.6 137 86.1
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 4.5e-63 244.6 140 85.0
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 5.9e-63 244.2 140 84.3
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 5.9e-63 244.2 137 86.1
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 7.7e-63 243.8 137 86.9
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 7.7e-63 243.8 140 84.3
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 7.7e-63 243.8 137 85.4
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 7.7e-63 243.8 140 84.3
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 7.7e-63 243.8 140 84.3
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.0e-62 243.4 137 86.1
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 1.0e-62 243.4 137 85.4
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.0e-62 243.4 137 86.1
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.3e-62 243.0 137 86.1
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.3e-62 243.0 137 86.1
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 1.7e-62 242.7 137 85.4
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.7e-62 242.7 137 84.7
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 1.7e-62 242.7 137 86.1
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.2e-62 242.3 140 83.6
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 2.2e-62 242.3 140 82.9
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.9e-62 241.9 137 86.1
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 2.9e-62 241.9 137 85.4
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 2.9e-62 241.9 137 85.4
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 3.8e-62 241.5 140 82.1
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.8e-62 241.5 140 82.1
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.8e-62 241.5 140 82.1
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 3.8e-62 241.5 137 84.7
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.0e-62 241.1 169 74.6
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 8.5e-62 240.4 140 81.4
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 8.5e-62 240.4 137 83.9
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 8.5e-62 240.4 137 83.9
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 1.4e-61 239.6 137 83.9
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.9e-61 239.2 140 81.4
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.5e-61 238.8 137 84.7
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 4.2e-61 238.0 137 84.7
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 9.4e-61 236.9 140 81.4
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.2e-60 236.5 137 83.2
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.6e-60 236.1 137 83.9
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 2.1e-60 235.7 137 83.9
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 3.6e-60 235.0 137 83.9
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 7.9e-60 233.8 147 81.0
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.0e-59 233.4 137 81.8
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 2.3e-59 232.3 137 83.9
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 2.3e-59 232.3 128 87.5
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 3.0e-59 231.9 137 83.2
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.0e-59 231.9 160 73.8
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 6.7e-59 230.7 166 71.1
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 6.7e-59 230.7 137 81.8
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.0e-58 229.2 136 81.6
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.3e-57 226.5 138 81.9
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.7e-57 226.1 137 78.8
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 2.6e-55 218.8 201 59.7
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 3.5e-55 218.4 137 75.2
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 8.5e-54 213.8 198 59.1
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.2e-53 211.8 149 72.5
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 5.5e-53 211.1 140 75.7
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 2.1e-52 209.1 126 78.6
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 3.0e-51 205.3 139 66.9
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.6e-50 202.2 114 87.7
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.1e-48 196.8 137 65.7
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.7e-46 189.5 160 63.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.7e-46 189.5 119 76.5
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 7.2e-45 184.1 137 59.9
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 8.0e-44 180.6 135 60.7
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.6e-42 175.6 100 84.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 5.7e-42 174.5 99 85.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 2.2e-41 172.6 97 85.6
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 3.0e-35 152.1 110 70.0
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 8.9e-27 124.0 139 46.8
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.7e-26 121.3 67 86.6
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 1.3e-25 120.2 67 83.6
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.7e-25 119.8 67 83.6
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 5.4e-24 114.8 70 77.1
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 8.6e-22 107.5 139 44.6
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 8.3e-17 90.9 43 95.3
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 1.6e-12 76.6 157 32.5
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 2.3e-11 72.8 53 66.0
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 1.2e-10 70.5 155 30.3
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 2.6e-10 69.3 44 72.7
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 3.7e-09 65.5 117 32.5
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.4e-08 62.8 135 28.1
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 9.2e-08 60.8 136 27.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.2e-07 60.5 135 27.4
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.2e-07 60.5 135 28.1
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.6e-07 60.1 135 27.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.6e-07 60.1 135 26.7
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.6e-07 60.1 135 27.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.1e-07 59.7 136 29.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.1e-07 59.7 136 29.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 2.1e-07 59.7 136 29.4
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 2.1e-07 59.7 135 27.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 2.1e-07 59.7 135 26.7
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.1e-07 59.7 136 27.9
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.1e-07 59.7 136 27.9
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.7e-07 59.3 135 27.4
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 3.5e-07 58.9 135 26.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 4.6e-07 58.5 135 26.7
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 4.6e-07 58.5 136 28.7
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 4.6e-07 58.5 135 26.7
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 4.6e-07 58.5 36 69.4
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 7.8e-07 57.8 136 28.7
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 7.8e-07 57.8 135 27.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 7.8e-07 57.8 136 28.7
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.0e-06 57.4 143 30.1
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.0e-06 57.4 135 26.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.0e-06 57.4 136 28.7
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.0e-06 57.4 135 26.7
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 1.0e-06 57.4 135 27.4
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.0e-06 57.4 135 25.9
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.3e-06 57.0 135 25.9
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.3e-06 56.2 133 28.6
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 3.0e-06 55.8 136 26.5
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 3.0e-06 55.8 135 25.9
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 3.0e-06 55.8 135 25.9
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 3.0e-06 55.8 135 25.2
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.0e-06 55.8 136 27.9
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.9e-06 55.5 135 25.2
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 3.9e-06 55.5 135 26.7
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.9e-06 55.5 137 29.9
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 5.1e-06 55.1 136 28.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.1e-06 55.1 136 27.9
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 6.6e-06 54.7 135 25.2
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 8.6e-06 54.3 135 25.2
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 8.6e-06 54.3 135 25.2
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 8.6e-06 54.3 135 25.2
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 8.6e-06 54.3 135 25.9


User provided reference genes

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