Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.1e-131 473.4 249 100.0
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.2e-114 416.8 267 86.5
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.6e-111 406.4 267 84.6
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 8.0e-111 404.1 267 83.9
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 3.0e-110 402.1 264 84.1
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 6.8e-110 401.0 268 82.8
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 8.8e-110 400.6 265 83.4
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 5.7e-109 397.9 278 79.5
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.3e-108 396.7 264 82.2
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.4e-107 393.3 278 79.1
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 2.4e-107 392.5 263 83.3
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 9.2e-107 390.6 263 82.9
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 9.2e-107 390.6 264 81.1
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 6.6e-105 384.4 301 73.1
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.3e-88 328.9 264 66.3
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.5e-88 327.4 266 65.4
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.1e-87 326.2 267 65.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 2.8e-87 325.9 264 65.2
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 3.1e-86 322.4 266 66.9
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 8.9e-86 320.9 265 65.3
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 8.9e-86 320.9 264 67.4
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.2e-85 320.5 264 66.7
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.2e-85 320.5 266 65.8
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.5e-85 320.1 266 66.9
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 2.0e-85 319.7 266 65.8
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 2.0e-85 319.7 266 65.4
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 3.4e-85 318.9 266 67.3
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 5.8e-85 318.2 264 66.3
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 7.5e-85 317.8 267 65.5
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 9.9e-85 317.4 267 63.7
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.7e-84 316.6 266 65.0
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.7e-84 316.6 266 64.7
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 4.9e-84 315.1 266 64.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 8.3e-84 314.3 266 65.4
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 8.3e-84 314.3 266 65.0
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.1e-83 313.9 261 65.9
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.4e-83 313.5 269 65.4
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.9e-83 313.2 259 66.0
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.9e-83 313.2 266 65.0
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.9e-83 313.2 266 62.8
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 4.1e-83 312.0 265 64.5
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 4.1e-83 312.0 266 64.3
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 7.1e-83 311.2 245 66.9
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 7.1e-83 311.2 266 65.0
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 9.2e-83 310.8 257 62.6
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 9.2e-83 310.8 267 62.5
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 1.2e-82 310.5 267 61.8
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.2e-82 310.5 263 65.0
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 1.2e-82 310.5 267 61.8
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.6e-82 310.1 253 63.2
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.1e-82 309.7 266 64.7
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.1e-82 309.7 269 62.5
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 2.1e-82 309.7 267 61.4
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 2.7e-82 309.3 267 61.0
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 2.7e-82 309.3 264 64.8
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 3.5e-82 308.9 267 62.5
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.3e-81 306.2 303 57.8
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 2.3e-81 306.2 267 62.9
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 2.3e-81 306.2 237 70.0
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 8.6e-81 304.3 262 63.7
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 8.6e-81 304.3 267 62.5
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.6e-81 304.3 282 58.5
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 1.1e-80 303.9 263 61.2
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.9e-80 303.1 263 63.9
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 4.3e-80 302.0 251 64.1
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 5.6e-80 301.6 251 64.1
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 5.6e-80 301.6 251 62.2
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 7.3e-80 301.2 253 61.3
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 7.3e-80 301.2 252 63.5
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.2e-79 300.4 251 62.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.6e-79 300.1 286 60.5
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 3.6e-79 298.9 250 63.2
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 4.7e-79 298.5 260 60.8
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 8.1e-79 297.7 267 58.8
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 8.1e-79 297.7 254 61.8
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.1e-78 297.4 248 63.7
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.1e-78 297.4 273 58.2
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 1.1e-78 297.4 186 79.0
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.1e-78 297.4 269 60.6
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.4e-78 297.0 245 61.2
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.1e-78 295.8 245 62.0
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 3.1e-78 295.8 247 64.0
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 4.0e-78 295.4 250 62.8
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 5.2e-78 295.0 251 61.8
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 5.2e-78 295.0 251 63.7
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 5.2e-78 295.0 245 62.9
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 6.8e-78 294.7 273 57.9
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 6.8e-78 294.7 260 62.7
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.2e-77 293.9 248 62.9
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 2.0e-77 293.1 251 62.5
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.6e-77 292.7 245 61.2
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.4e-77 292.4 234 67.5
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 3.4e-77 292.4 265 60.4
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 5.8e-77 291.6 262 59.5
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 5.8e-77 291.6 267 59.2
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 7.6e-77 291.2 273 57.5
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 7.6e-77 291.2 234 66.7
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 9.9e-77 290.8 267 57.3
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.3e-76 290.4 248 59.7
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.3e-76 290.4 247 64.4
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.7e-76 290.0 205 72.7
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 1.7e-76 290.0 239 65.3
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.7e-76 290.0 186 78.0
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 2.9e-76 289.3 263 58.2
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 3.8e-76 288.9 255 59.2
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 1.1e-75 287.3 350 48.9
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.4e-75 287.0 245 62.9
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 1.9e-75 286.6 237 64.6
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 4.1e-75 285.4 246 60.6
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 5.4e-75 285.0 265 60.0
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.6e-74 283.5 227 65.6
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.6e-74 282.0 271 59.8
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 6.0e-74 281.6 265 60.0
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 7.8e-74 281.2 185 76.2
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.0e-73 280.8 334 50.9
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.3e-73 280.4 246 60.2
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.3e-72 275.4 186 73.1
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 4.3e-72 275.4 245 60.8
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.1e-71 273.1 186 72.6
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 5.2e-70 268.5 186 69.9
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.2e-70 268.5 196 68.9
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 6.9e-70 268.1 220 66.4
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.5e-69 266.9 185 71.4
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 3.4e-69 265.8 267 58.8
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 2.2e-68 263.1 256 56.2
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 4.2e-67 258.8 248 56.9
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 3.5e-66 255.8 266 57.1
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.5e-64 250.4 186 67.2
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.3e-64 248.8 249 54.2
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.8e-63 246.1 261 55.9
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 1.1e-62 244.2 248 58.1
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 1.4e-62 243.8 275 54.9
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.4e-62 243.8 184 66.8
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 5.3e-62 241.9 240 54.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.5e-61 240.4 243 54.3
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.6e-61 239.6 253 51.4
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.3e-60 237.3 247 54.7
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 6.4e-60 235.0 252 52.0
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 5.4e-59 231.9 198 62.6
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 7.1e-59 231.5 267 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 2.3e-57 226.5 245 49.8
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.0e-57 226.1 234 52.1
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 2.8e-55 219.5 253 48.6
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.8e-55 219.5 218 56.0
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 9.0e-54 214.5 253 50.2
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.3e-52 210.7 200 56.5
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 2.9e-52 209.5 207 55.1
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 3.2e-51 206.1 262 48.5
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.7e-50 203.0 206 54.4
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.0e-49 201.1 234 47.4
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 1.6e-47 193.7 244 44.3
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.2e-45 187.6 166 60.8
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 2.7e-42 176.4 122 73.0
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 4.1e-38 162.5 152 60.5
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 2.0e-37 160.2 118 74.6
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 2.0e-37 160.2 118 74.6
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.4e-35 154.1 105 73.3
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.8e-33 147.1 148 56.8
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 8.8e-33 144.8 100 72.0
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.1e-27 127.9 99 66.7
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 2.1e-26 123.6 239 36.4
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 2.0e-21 107.1 82 67.1
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.0e-20 104.8 176 43.2
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.7e-20 104.0 61 78.7
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 5.7e-16 89.0 85 55.3
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 7.0e-14 82.0 99 42.4
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.2e-13 81.3 68 58.8
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.7e-12 77.4 106 42.5
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 2.2e-07 60.5 123 37.4
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 2.8e-07 60.1 37 73.0
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.7e-07 59.7 38 71.1
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.4e-06 57.0 38 63.2
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 7.0e-06 55.5 40 60.0


User provided reference genes

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