Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 5.5e-43 177.6 112 100.0
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 8.2e-39 163.7 112 92.9
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 3.1e-38 161.8 112 92.0
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 6.9e-38 160.6 112 91.1
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 6.9e-38 160.6 112 91.1
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 1.0e-36 156.8 114 90.4
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 1.7e-36 156.0 113 90.3
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 4.7e-34 147.9 110 89.1
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 1.8e-33 146.0 109 87.2
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 1.8e-33 146.0 109 87.2
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 3.9e-33 144.8 109 80.7
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 3.9e-33 144.8 109 80.7
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 2.0e-32 142.5 109 85.3
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 2.6e-32 142.1 109 89.9
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 8.2e-31 137.1 101 90.1
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 2.9e-20 102.1 112 49.1
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 8.5e-20 100.5 112 47.3
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 9.4e-19 97.1 113 50.4
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 1.2e-18 96.7 113 49.6
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 4.0e-17 91.7 109 45.9
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.6e-16 89.0 110 44.5
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 2.6e-16 89.0 107 46.7
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 2.6e-16 89.0 107 45.8
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 5.7e-16 87.8 102 50.0
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 9.7e-16 87.0 108 46.3
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 9.7e-16 87.0 108 47.2
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.7e-15 86.3 101 48.5
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 2.2e-15 85.9 107 42.1
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 3.7e-15 85.1 112 44.6
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.1e-14 83.6 110 42.7
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 1.1e-14 83.6 110 42.7
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 1.1e-14 83.6 113 42.5
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 1.8e-14 82.8 113 43.4
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 4.1e-14 81.6 50 74.0
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 4.1e-14 81.6 50 74.0
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 4.1e-14 81.6 113 44.2
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 7.0e-14 80.9 109 44.0
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 1.6e-13 79.7 107 42.1
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 4.5e-13 78.2 105 46.7
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 4.5e-13 78.2 104 40.4
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 4.5e-13 78.2 104 40.4
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 7.7e-13 77.4 104 38.5
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.0e-12 77.0 110 44.5
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 1.0e-12 77.0 112 39.3
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.3e-12 76.6 103 43.7
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.7e-12 76.3 104 44.2
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 2.2e-12 75.9 104 44.2
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.2e-12 75.9 104 44.2
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.2e-12 75.9 104 44.2
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.2e-12 75.9 104 44.2
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 2.9e-12 75.5 112 41.1
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 1.5e-11 73.2 54 64.8
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 2.5e-11 72.4 113 38.1
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 3.2e-11 72.0 43 76.7
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 4.2e-11 71.6 108 39.8
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 1.2e-10 70.1 112 41.1
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.7e-10 68.9 108 41.7
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 2.7e-10 68.9 108 41.7
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 3.6e-10 68.6 114 41.2
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 4.7e-10 68.2 112 36.6
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 1.4e-09 66.6 104 40.4
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 3.0e-09 65.5 55 58.2
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 3.0e-09 65.5 41 73.2
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 1.2e-08 63.5 106 36.8
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 3.4e-08 62.0 107 39.3
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 4.4e-08 61.6 112 34.8
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 4.4e-08 61.6 117 35.9
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 5.7e-08 61.2 112 37.5
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 7.5e-08 60.8 49 57.1
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.3e-07 60.1 47 63.8
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.3e-07 60.1 47 63.8
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 1.7e-07 59.7 113 34.5
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 1.7e-07 59.7 46 54.3
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 3.7e-07 58.5 55 56.4
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 3.7e-07 58.5 45 51.1
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 3.7e-07 58.5 45 53.3
CDE05G2539 Ceratophyllum demersum HOM05D002019 ORTHO05D002150 4.8e-07 58.2 53 52.8
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 6.3e-07 57.8 53 49.1
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 8.3e-07 57.4 44 54.5
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.1e-06 57.0 45 64.4
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 1.1e-06 57.0 110 34.5
SEGI_14454 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 2.4e-06 55.8 56 46.4
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 2.4e-06 55.8 46 54.3
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 4.1e-06 55.1 44 54.5
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 5.4e-06 54.7 44 54.5
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 5.4e-06 54.7 42 54.8
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 7.0e-06 54.3 43 60.5
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 7.0e-06 54.3 44 54.5
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 9.1e-06 53.9 40 62.5
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 9.1e-06 53.9 50 50.0
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 9.1e-06 53.9 50 50.0


User provided reference genes

Program Settings