Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 2123.2 1049 100.0
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1954.1 1049 91.2
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1916.4 1050 89.9
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1910.6 1050 89.9
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1907.5 1050 89.1
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1903.3 1050 89.3
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1901.7 1050 89.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1877.8 1050 87.3
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1856.6 1054 86.8
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1844.7 1052 86.2
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1783.1 1049 85.0
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1669.1 1054 78.2
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1463.4 1047 68.1
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1439.9 1048 66.9
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1412.5 1043 65.5
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1403.7 1066 66.8
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1401.0 1063 65.9
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1398.6 1050 65.3
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1390.6 1051 64.5
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1388.6 1050 64.3
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1379.0 1050 63.7
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1378.6 1040 64.4
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1375.9 1051 64.5
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1374.8 1051 64.6
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1374.8 1052 64.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1372.8 1052 64.2
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1369.8 1045 62.9
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1366.7 1058 64.0
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1364.0 1054 64.1
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1360.9 1052 62.6
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1360.1 1050 63.8
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1360.1 1053 62.9
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1359.0 1030 64.0
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1356.7 1050 62.4
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1356.3 1046 62.8
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1356.3 1055 62.8
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1355.9 1048 63.5
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1354.0 1077 62.6
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1353.6 1054 62.5
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1345.9 1049 63.0
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1344.3 1044 62.8
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1338.9 1050 62.2
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1332.8 1055 63.0
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1330.5 1045 62.1
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1324.7 1066 61.2
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1323.5 1040 62.3
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1320.4 1046 61.2
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1312.4 1049 61.4
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1305.4 1079 60.8
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1298.1 1049 61.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1295.4 1046 62.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1293.5 913 74.0
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1290.4 1054 61.1
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1286.9 1065 61.2
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1286.6 1166 56.9
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1279.6 1056 59.9
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1276.9 1061 59.5
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1276.5 1061 59.6
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1275.0 1055 59.9
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1044 60.2
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1260.7 1051 59.1
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1257.3 1010 61.5
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1249.6 1065 58.5
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1246.1 1043 59.6
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1246.1 1046 58.3
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 1084 57.8
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1236.9 1104 56.3
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1234.2 1047 57.3
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1232.2 1099 57.2
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1228.4 1048 57.5
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1225.3 1057 58.7
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1223.8 1076 57.4
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1222.6 1055 58.2
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1220.3 1052 58.0
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1213.7 1054 58.8
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1213.0 1075 57.0
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1194.1 1129 53.8
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1190.3 1050 55.9
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1178.3 1044 56.6
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1175.2 1044 56.4
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1174.1 1033 55.8
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1171.8 1050 57.1
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1143.6 1049 54.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1137.9 851 64.7
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1137.1 1043 53.8
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1129.0 1056 55.1
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1115.5 1024 54.0
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1114.8 1177 51.6
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1114.4 1049 55.0
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1087.0 1132 51.1
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 7.2e-312 1074.3 1045 52.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 5.8e-296 1021.1 880 56.9
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 6.0e-285 984.6 1019 49.7
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-283 980.3 717 71.8
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.6e-282 976.5 1051 49.5
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.5e-267 926.8 511 90.2
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 3.6e-253 879.0 879 52.4
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.4e-252 877.1 676 62.7
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 3.5e-248 862.4 1059 45.1
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.2e-232 810.8 1054 41.7
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.3e-231 806.6 511 78.7
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 3.1e-212 743.0 735 52.5
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 7.3e-206 721.8 707 52.6
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.1e-197 693.7 725 49.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.1e-196 689.9 820 46.8
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.5e-190 671.0 836 42.3
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 3.6e-189 666.4 562 59.8
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 3.4e-187 659.8 662 50.8
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.3e-186 657.9 508 62.6
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 3.9e-175 619.8 1048 35.9
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.6e-173 614.4 1052 37.4
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.4e-169 601.3 350 83.4
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 8.7e-167 592.0 860 37.3
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 1.5e-166 591.3 595 51.6
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 9.7e-158 562.0 488 58.4
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.7e-146 524.6 438 61.0
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 2.0e-142 511.1 376 66.2
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 9.1e-124 449.1 447 50.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.9e-121 441.4 341 61.9
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.0e-115 421.4 853 32.7
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.9e-105 388.3 347 55.6
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 7.3e-105 386.3 390 56.9
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.5e-97 361.3 1126 26.9
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 8.3e-93 346.3 323 59.1
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 2.7e-91 341.3 267 68.9
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 4.5e-70 270.8 330 49.1
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.8e-70 270.4 207 62.3
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-68 266.2 210 68.6
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.1e-68 266.2 245 56.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.9e-68 265.4 952 26.4
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 9.6e-65 253.1 288 45.8
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.2e-62 246.1 177 67.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 4.5e-62 244.2 505 32.5
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 5.8e-62 243.8 218 55.5
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.9e-60 238.8 1166 23.9
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 6.2e-56 223.8 245 48.2
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.2e-54 219.5 203 50.7
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.2e-51 209.5 165 61.2
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.8e-48 197.6 113 86.7
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.4e-47 196.1 127 73.2
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 5.3e-39 167.5 192 44.3
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 4.7e-27 127.9 87 69.0
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 2.0e-25 122.5 154 44.8
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 3.1e-23 115.2 165 42.4
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.6e-22 112.1 100 52.0
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 7.7e-22 110.5 163 38.7
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 5.5e-20 104.4 82 57.3
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 2.7e-19 102.1 104 54.8
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-18 99.4 106 50.0
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 2.0e-17 95.9 70 62.9
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 4.4e-17 94.7 80 66.2
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 5.7e-17 94.4 106 47.2
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 4.5e-14 84.7 70 58.6
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.7e-13 82.8 121 38.0
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 2.1e-11 75.9 83 44.6
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.7e-08 66.2 56 53.6


User provided reference genes

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