Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.8e-64 248.4 124 100.0
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.0e-62 242.3 124 96.8
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-61 240.0 124 96.0
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-61 240.0 124 96.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.9e-61 238.4 124 96.8
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 3.8e-61 238.0 124 96.0
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.9e-61 237.7 124 96.8
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 6.5e-61 237.3 124 93.5
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 6.5e-61 237.3 124 95.2
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 8.4e-61 236.9 124 93.5
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 8.4e-61 236.9 124 95.2
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 8.4e-61 236.9 124 93.5
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 8.4e-61 236.9 124 93.5
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-60 236.1 124 96.0
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-60 236.1 124 94.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-60 236.1 124 96.0
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-60 236.1 124 96.0
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-60 235.0 124 95.2
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-60 235.0 124 95.2
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-60 234.2 124 92.7
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-60 234.2 124 95.2
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 5.5e-60 234.2 124 95.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 5.5e-60 234.2 124 92.7
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 9.3e-60 233.4 124 95.2
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 9.3e-60 233.4 124 96.0
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.9e-59 230.3 124 93.5
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.8e-58 229.2 124 92.7
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.0e-58 228.4 124 92.7
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 5.1e-58 227.6 124 91.9
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.5e-49 198.7 124 81.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 74.6
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.3e-42 175.6 126 73.0
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.1e-42 174.5 126 71.4
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.8e-42 173.7 126 69.8
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 7.4e-41 170.6 126 70.6
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.8e-39 166.0 126 69.0
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.6e-30 135.6 132 59.1
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.5e-28 129.0 124 60.5
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.4e-28 127.1 127 59.1
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 5.0e-21 104.8 103 55.3
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 5.0e-21 104.8 126 48.4
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.6e-19 99.8 123 49.6
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.0e-18 97.1 137 43.8
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.0e-18 97.1 127 50.4
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.8e-18 96.3 124 48.4
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.8e-18 96.3 122 47.5
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 5.2e-18 94.7 135 46.7
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 5.2e-18 94.7 122 46.7
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 5.2e-18 94.7 119 47.9
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 6.8e-18 94.4 127 46.5
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-17 93.6 122 45.9
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.5e-17 93.2 120 45.8
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.5e-17 93.2 123 47.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 2.0e-17 92.8 118 47.5
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.6e-17 92.4 123 47.2
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 7.5e-17 90.9 116 48.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 7.5e-17 90.9 123 44.7
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 7.5e-17 90.9 126 45.2
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 7.5e-17 90.9 137 46.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 9.8e-17 90.5 127 44.9
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.3e-16 90.1 133 42.9
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.7e-16 89.7 136 42.6
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.8e-16 89.0 127 44.1
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.7e-16 88.6 139 41.0
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 3.7e-16 88.6 127 45.7
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.8e-16 88.2 138 42.8
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.8e-16 88.2 138 42.8
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 4.8e-16 88.2 127 45.7
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.3e-16 87.8 133 42.1
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 6.3e-16 87.8 123 45.5
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 8.3e-16 87.4 146 39.0
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 8.3e-16 87.4 119 47.1
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 8.3e-16 87.4 126 43.7
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.1e-15 87.0 129 42.6
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.1e-15 87.0 126 42.1
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.1e-15 87.0 123 45.5
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.8e-15 86.3 127 42.5
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.4e-15 85.9 128 45.3
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-15 85.9 127 44.9
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.1e-15 85.1 141 41.8
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.1e-15 85.1 134 41.8
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 5.4e-15 84.7 128 43.0
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 7.0e-15 84.3 122 43.4
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 9.1e-15 84.0 124 42.7
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.2e-14 83.6 118 43.2
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.2e-14 83.6 134 44.8
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.6e-14 83.2 131 46.6
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.0e-14 82.8 128 43.0
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.7e-14 82.4 81 59.3
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.7e-14 82.4 120 45.0
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.7e-14 82.4 130 44.6
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.5e-14 82.0 125 41.6
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 3.5e-14 82.0 136 39.7
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.5e-14 82.0 134 38.8
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 3.5e-14 82.0 125 44.0
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 4.5e-14 81.6 124 42.7
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 4.5e-14 81.6 123 43.1
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 5.9e-14 81.3 128 38.3
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 5.9e-14 81.3 129 38.8
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.0e-13 80.5 131 41.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-13 80.5 129 41.1
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-13 80.5 129 41.1
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.0e-13 80.5 129 41.1
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.3e-13 80.1 131 39.7
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-13 79.7 130 40.8
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.7e-13 79.7 131 41.2
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-13 79.7 130 40.8
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.7e-13 79.7 123 43.1
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 5.0e-13 78.2 134 41.0
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.5e-13 77.8 138 38.4
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.5e-13 77.4 136 39.0
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 8.5e-13 77.4 125 40.0
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 8.5e-13 77.4 129 44.2
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.5e-12 76.6 135 40.7
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.5e-12 76.6 130 43.1
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.5e-12 76.6 130 39.2
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.9e-12 76.3 125 41.6
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.7e-11 72.4 130 35.4
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-11 72.4 123 39.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.7e-11 72.4 130 35.4
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.7e-11 72.4 130 35.4
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.7e-11 72.4 123 39.8
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.7e-11 72.4 129 37.2
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 2.7e-11 72.4 120 40.8
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 3.6e-11 72.0 95 42.1
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.6e-11 72.0 144 37.5
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 4.7e-11 71.6 115 39.1
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.1e-11 71.2 129 38.8
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.1e-11 71.2 130 35.4
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.0e-10 70.5 125 36.0
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.4e-10 70.1 124 37.9
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 3.0e-10 68.9 130 38.5
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.0e-10 68.9 113 40.7
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 3.0e-10 68.9 113 40.7
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.0e-10 68.6 127 36.2
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 6.8e-10 67.8 125 38.4
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-09 67.0 127 37.0
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-09 66.6 127 37.0
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.4e-09 65.5 62 54.8
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 3.4e-09 65.5 123 38.2
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.8e-09 63.9 129 34.1
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 9.8e-09 63.9 119 34.5
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 9.8e-09 63.9 138 35.5
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-08 63.2 149 32.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.7e-08 63.2 117 33.3
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.2e-08 62.8 123 39.0
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 2.8e-08 62.4 114 44.7
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 3.7e-08 62.0 39 66.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.3e-08 61.2 120 37.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 6.3e-08 61.2 112 36.6
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 8.3e-08 60.8 112 33.9
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 2.4e-07 59.3 121 38.0
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 2.4e-07 59.3 113 38.1
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.1e-07 58.9 123 36.6
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.1e-07 58.9 114 38.6
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.1e-07 58.5 101 39.6
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.1e-07 58.5 49 55.1
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.1e-07 58.5 122 37.7
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 5.4e-07 58.2 102 39.2
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 5.4e-07 58.2 112 38.4
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 5.4e-07 58.2 123 36.6
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 5.4e-07 58.2 118 36.4
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-06 55.5 116 35.3
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 3.5e-06 55.5 116 35.3
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.5e-06 55.5 113 37.2
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.5e-06 55.5 115 37.4
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 3.5e-06 55.5 113 38.1
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 5.9e-06 54.7 109 33.9


User provided reference genes

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