Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 5.9e-165 584.3 341 100.0
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.1e-89 332.8 329 69.3
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.3e-89 332.0 329 68.7
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.5e-88 328.9 340 66.5
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 7.4e-83 311.6 326 64.1
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.8e-82 309.7 331 69.5
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-64 251.1 289 61.2
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.9e-63 246.5 306 61.8
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 3.8e-63 246.1 306 61.1
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-61 240.7 289 62.6
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 3.6e-61 239.6 289 63.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.1e-57 228.0 347 52.4
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.3e-55 221.1 295 61.4
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 7.2e-54 215.3 292 58.2
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.4e-52 211.1 343 45.8
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 2.3e-52 210.3 296 60.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 8.8e-52 208.4 331 46.8
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.4e-49 200.3 291 57.0
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.4e-49 200.3 291 57.0
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 9.1e-49 198.4 317 49.8
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.5e-47 192.2 382 48.4
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.1e-45 187.2 361 49.0
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 4.7e-45 186.0 303 49.8
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 6.1e-45 185.7 332 52.1
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.4e-44 184.5 287 52.6
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.3e-44 183.7 287 52.3
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-43 181.4 289 52.6
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 2.2e-42 177.2 303 46.2
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 3.7e-42 176.4 303 45.9
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.4e-41 174.5 288 54.5
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 2.9e-39 166.8 288 54.2
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 2.9e-39 166.8 288 54.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.4e-36 157.9 365 35.6
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 6.8e-36 155.6 330 46.1
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 1.2e-35 154.8 363 34.4
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 7.5e-35 152.1 330 41.8
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.2e-34 150.6 320 42.8
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.2e-34 150.6 339 41.6
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.2e-34 150.6 320 39.4
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.2e-34 150.6 365 35.6
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.9e-34 150.2 370 34.3
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.0e-32 144.1 358 36.3
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.3e-31 141.4 365 34.8
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.9e-31 139.8 310 37.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 5.0e-31 139.4 310 36.1
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 5.0e-31 139.4 330 40.3
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.1e-30 138.3 327 42.5
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.9e-30 137.5 300 40.0
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 3.3e-30 136.7 361 34.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 5.6e-30 136.0 361 33.2
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 5.6e-30 136.0 325 42.8
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.6e-29 134.4 310 36.1
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.6e-29 134.4 310 36.1
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 3.6e-29 133.3 345 33.9
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 4.7e-29 132.9 366 39.9
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 6.2e-29 132.5 312 37.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.4e-28 131.3 320 43.4
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.4e-28 131.3 342 35.1
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 2.3e-28 130.6 300 39.0
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 4.0e-28 129.8 303 36.0
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.2e-27 128.3 372 38.4
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.2e-27 128.3 347 33.7
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.2e-27 128.3 329 34.3
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.5e-27 127.9 290 43.1
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.5e-27 127.9 331 43.2
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-27 127.5 313 36.7
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-27 127.5 313 36.7
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 3.4e-27 126.7 334 33.8
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 9.8e-27 125.2 326 40.5
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.2e-26 124.0 312 41.0
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.9e-26 123.6 316 35.1
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.7e-26 123.2 341 33.4
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 6.4e-26 122.5 326 37.7
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.4e-26 122.5 362 33.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.4e-25 120.6 366 32.8
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.4e-25 119.4 313 39.0
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 9.2e-25 118.6 313 39.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.2e-24 118.2 378 35.4
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.6e-24 117.9 316 34.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.7e-24 117.1 313 39.9
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.5e-24 116.7 315 35.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 6.0e-24 115.9 314 34.7
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.0e-23 115.2 329 39.8
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.7e-23 114.4 310 33.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.0e-23 113.6 316 34.8
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 3.0e-23 113.6 332 32.2
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 8.6e-23 112.1 307 33.2
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.1e-22 111.7 365 34.8
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.5e-22 111.3 313 36.7
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.5e-22 111.3 313 36.7
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.9e-22 110.9 302 35.1
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.5e-22 110.5 302 33.8
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.5e-22 110.5 370 40.0
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.3e-22 109.8 374 40.1
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 5.6e-22 109.4 315 36.8
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.1e-21 107.5 372 40.1
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 2.1e-21 107.5 313 38.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.6e-21 106.7 329 34.7
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 3.6e-21 106.7 313 37.7
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.7e-21 106.3 313 36.7
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 6.2e-21 105.9 315 33.3
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.1e-20 105.1 327 33.6
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.4e-20 104.8 313 38.7
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.8e-20 104.4 303 31.7
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 5.2e-20 102.8 370 33.8
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 8.9e-20 102.1 373 34.3
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 8.9e-20 102.1 306 33.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 8.9e-20 102.1 306 33.7
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 7.5e-19 99.0 380 29.2
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.7e-18 97.8 372 34.7
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 2.2e-18 97.4 304 33.9
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.9e-18 97.1 360 34.7
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.9e-18 97.1 313 33.5
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.9e-18 97.1 134 67.2
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.9e-18 97.1 351 31.9
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 3.7e-18 96.7 336 30.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 4.9e-18 96.3 351 31.3
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 9.2e-17 92.0 329 31.3
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 6.0e-16 89.4 305 30.2
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 1.0e-15 88.6 218 39.0
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.0e-15 88.6 303 39.3
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.0e-15 88.6 379 28.8
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.0e-15 88.6 332 31.3
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.3e-15 88.2 332 31.3
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.3e-15 87.4 344 31.4
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.0e-15 87.0 322 31.4
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.9e-15 86.7 381 28.6
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.1e-15 86.3 193 39.4
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 8.6e-15 85.5 319 29.8
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.5e-14 84.7 315 33.3
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.9e-14 84.3 331 29.6
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.9e-14 84.3 297 33.0
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 3.3e-14 83.6 327 30.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.3e-14 83.6 307 31.6
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.3e-14 83.6 307 31.6
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.3e-14 83.2 286 31.1
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 7.3e-14 82.4 315 31.4
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 9.5e-14 82.0 307 32.2
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.2e-13 81.6 213 31.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 6.2e-13 79.3 314 29.9
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 6.2e-13 79.3 315 31.4
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 8.1e-13 79.0 339 35.4
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 1.1e-12 78.6 314 29.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 5.2e-12 76.3 345 31.3
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 8.9e-12 75.5 318 29.2
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.2e-11 75.1 328 30.2
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.5e-11 74.7 367 28.9
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.4e-11 73.6 151 41.1
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.4e-11 73.2 354 28.2
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.4e-11 73.2 354 28.2
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.3e-10 71.6 319 29.8
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.7e-10 71.2 206 30.1
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 2.2e-10 70.9 304 29.6
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.9e-10 69.7 338 29.3
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 8.4e-10 68.9 295 30.2
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 4.6e-08 63.2 135 38.5
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 4.6e-08 63.2 271 29.9
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 6.0e-08 62.8 237 30.0
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.3e-07 61.6 307 29.0
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 6.6e-07 59.3 326 30.7
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 7.3e-06 55.8 162 34.0


User provided reference genes

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