Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.2e-75 285.0 146 100.0
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.6e-69 265.4 147 93.9
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.3e-68 263.1 148 91.2
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.3e-68 263.1 147 91.8
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 4.9e-68 261.2 148 90.5
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 6.6e-65 250.8 153 87.6
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 2.0e-61 239.2 152 80.9
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 7.1e-59 230.7 146 82.9
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 9.3e-59 230.3 146 82.9
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-58 229.9 146 82.9
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.0e-57 226.9 148 82.4
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.0e-57 226.9 148 82.4
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 5.1e-49 198.0 146 69.9
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 4.5e-45 184.9 142 70.4
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.3e-36 156.8 143 64.3
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 6.5e-36 154.5 146 63.7
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 8.5e-36 154.1 142 63.4
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.4e-35 153.3 144 63.2
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 2.5e-35 152.5 142 62.7
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 2.5e-35 152.5 142 62.7
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 2.5e-35 152.5 142 62.7
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 3.2e-35 152.1 141 63.8
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 3.2e-35 152.1 141 61.7
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.6e-34 149.8 148 56.8
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 1.6e-34 149.8 148 56.8
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 3.6e-34 148.7 141 58.9
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.8e-33 146.4 140 60.0
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 8.8e-33 144.1 143 62.2
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 8.8e-33 144.1 148 56.1
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.9e-32 142.9 144 52.8
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.3e-32 142.1 135 54.8
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 9.7e-32 140.6 146 52.7
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.3e-31 140.2 130 57.7
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.3e-31 140.2 143 52.4
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.3e-31 140.2 144 51.4
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.8e-31 139.0 150 50.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 3.7e-31 138.7 152 53.3
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.8e-31 138.3 146 52.1
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 4.8e-31 138.3 146 51.4
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 6.3e-31 137.9 146 55.5
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.3e-31 137.9 124 61.3
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 8.2e-31 137.5 143 53.1
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.1e-30 137.1 129 58.1
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.1e-30 137.1 154 50.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.4e-30 136.7 129 59.7
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.4e-30 136.7 119 59.7
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.4e-30 136.0 129 57.4
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 2.4e-30 136.0 143 54.5
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 3.1e-30 135.6 143 53.8
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 3.1e-30 135.6 141 55.3
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.1e-30 135.2 143 52.4
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.2e-29 133.7 150 52.7
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.2e-29 133.7 119 58.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.5e-29 133.3 132 55.3
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.5e-29 133.3 147 50.3
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.0e-29 132.9 141 59.6
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 2.0e-29 132.9 126 54.0
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 3.4e-29 132.1 132 52.3
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.4e-29 132.1 143 52.4
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 4.5e-29 131.7 141 53.2
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 4.5e-29 131.7 141 53.2
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 5.9e-29 131.3 150 50.7
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 5.9e-29 131.3 127 52.0
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 1.0e-28 130.6 127 56.7
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.3e-28 130.2 140 50.7
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.2e-28 129.4 132 53.8
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.9e-28 129.0 153 47.1
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 3.8e-28 128.6 149 51.7
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.8e-28 128.6 148 46.6
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 6.5e-28 127.9 126 52.4
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 8.5e-28 127.5 129 56.6
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.9e-27 126.3 129 55.8
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 2.5e-27 125.9 131 54.2
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 3.2e-27 125.6 140 49.3
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.2e-27 125.6 150 49.3
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 9.4e-27 124.0 144 51.4
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 9.4e-27 124.0 141 48.2
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 2.1e-26 122.9 150 47.3
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 3.6e-26 122.1 144 48.6
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.7e-26 121.7 145 49.0
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.0e-25 120.6 148 48.0
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.8e-25 119.8 133 50.4
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 2.3e-25 119.4 148 43.2
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.3e-25 119.4 150 48.7
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.9e-25 118.6 154 46.1
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 5.1e-25 118.2 138 47.1
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 6.7e-25 117.9 121 50.4
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 8.8e-25 117.5 144 49.3
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.7e-24 114.8 127 48.8
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 7.4e-24 114.4 133 45.9
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.7e-24 114.0 145 47.6
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.3e-23 113.6 127 47.2
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.8e-23 112.5 162 39.5
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.8e-23 112.5 133 44.4
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 3.7e-23 112.1 139 41.7
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 3.7e-23 112.1 134 47.0
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 4.8e-23 111.7 150 44.7
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 6.3e-23 111.3 136 45.6
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.1e-22 110.5 142 48.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 3.1e-22 109.0 149 45.0
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 5.3e-22 108.2 126 48.4
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.2e-21 107.1 145 47.6
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.5e-21 106.7 101 56.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.5e-21 106.7 127 44.1
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 2.0e-21 106.3 129 48.1
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 5.9e-21 104.8 130 45.4
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.0e-20 104.0 131 45.0
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.0e-20 104.0 158 37.3
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.7e-20 103.2 79 53.2
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.7e-20 103.2 158 37.3
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 5.0e-20 101.7 142 41.5
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 5.0e-20 101.7 132 49.2
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.1e-19 100.5 125 48.0
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.5e-19 98.2 137 45.3
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 9.4e-19 97.4 129 45.7
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 9.4e-19 97.4 78 56.4
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 6.1e-18 94.7 72 50.0
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 2.3e-17 92.8 144 38.9
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.9e-17 92.0 105 45.7
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 5.2e-17 91.7 145 38.6
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 6.7e-17 91.3 103 44.7
C07p61110 Brassica napus HOM05D005114 ORTHO05D021810 2.0e-16 89.7 91 62.6
BcaNung02389 Brassica carinata HOM05D005114 ORTHO05D021810 2.6e-16 89.4 91 62.6
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 2.8e-15 85.9 118 40.7
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.7e-15 85.5 90 54.4
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.7e-15 85.5 145 35.9
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 4.8e-15 85.1 125 44.0
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 8.2e-15 84.3 113 39.8
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 3.1e-14 82.4 133 39.1
BcaNung06456 Brassica carinata HOM05D005114 ORTHO05D021810 5.3e-14 81.6 90 56.7
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 7.0e-14 81.3 127 40.9
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 1.2e-13 80.5 80 46.2
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.3e-12 77.0 102 43.1
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 5.5e-11 71.6 136 33.8
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.6e-10 70.1 53 54.7
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.0e-09 67.4 129 33.3
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 8.8e-09 64.3 107 40.2
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.0e-08 63.2 124 37.1
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 9.7e-08 60.8 139 30.9
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.3e-06 55.1 54 44.4
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 5.3e-06 55.1 146 32.9


User provided reference genes

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