Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 9.3e-139 496.9 255 100.0
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 3.5e-130 468.4 254 94.1
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 7.9e-130 467.2 255 92.5
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 3.9e-129 464.9 255 92.5
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.1e-128 463.4 255 91.8
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.5e-128 463.0 255 91.8
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.3e-128 461.8 255 90.6
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 3.3e-128 461.8 255 91.8
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 7.6e-125 450.7 255 88.6
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 6.7e-121 437.6 251 87.3
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.4e-118 429.9 255 84.7
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.4e-105 386.7 255 74.9
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 7.4e-104 380.9 254 73.2
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 7.0e-102 374.4 205 91.2
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 7.0e-102 374.4 253 71.1
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 7.7e-101 370.9 254 70.5
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 1.7e-100 369.8 251 72.5
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 2.2e-100 369.4 255 69.4
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 2.9e-100 369.0 251 71.7
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 5.0e-100 368.2 249 71.9
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 6.5e-100 367.9 255 69.4
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.1e-99 367.1 254 70.9
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.1e-99 367.1 254 68.5
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 1.1e-99 367.1 251 72.5
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.5e-99 366.7 254 71.3
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.9e-99 366.3 247 73.3
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.9e-99 366.3 255 71.0
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.5e-99 365.9 254 69.7
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.2e-99 365.5 255 69.0
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 4.2e-99 365.2 254 68.9
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 4.2e-99 365.2 254 70.5
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 4.2e-99 365.2 249 69.9
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 5.5e-99 364.8 254 69.7
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 9.4e-99 364.0 255 70.6
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 9.4e-99 364.0 248 73.0
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 9.4e-99 364.0 258 69.8
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.4e-99 364.0 254 69.7
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.2e-98 363.6 254 68.9
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.2e-98 363.6 255 69.8
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.2e-98 363.6 254 68.1
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 1.6e-98 363.2 248 70.2
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.7e-98 362.5 246 69.9
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 3.6e-98 362.1 255 69.4
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 4.7e-98 361.7 254 69.3
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 8.0e-98 360.9 248 71.4
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 2.3e-97 359.4 248 71.4
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 2.3e-97 359.4 252 67.9
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 3.9e-97 358.6 246 69.9
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 3.9e-97 358.6 245 71.0
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 6.7e-97 357.8 291 62.2
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 8.8e-97 357.5 254 68.9
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.5e-96 356.7 246 71.1
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.5e-96 356.7 247 69.6
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.0e-96 356.3 248 72.2
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 2.0e-96 356.3 254 67.7
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.0e-96 356.3 251 68.9
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 4.4e-96 355.1 245 69.4
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 7.4e-96 354.4 246 69.5
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.3e-95 353.6 243 70.8
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.3e-95 353.6 244 68.9
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.7e-95 353.2 250 69.6
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 2.2e-95 352.8 247 69.2
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 8.2e-95 350.9 254 66.5
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.1e-94 350.5 254 66.5
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.4e-94 350.1 247 67.2
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.8e-94 349.7 252 66.7
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.8e-94 349.7 235 70.6
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 2.4e-94 349.4 254 66.9
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 3.1e-94 349.0 243 67.9
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 3.1e-94 349.0 237 70.9
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 4.1e-94 348.6 245 66.5
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 4.1e-94 348.6 247 68.0
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 5.3e-94 348.2 239 69.9
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 5.3e-94 348.2 246 69.9
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 7.0e-94 347.8 243 69.1
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 9.1e-94 347.4 189 92.6
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 9.1e-94 347.4 234 72.6
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.6e-93 346.7 246 65.9
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.6e-93 346.7 255 65.9
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 3.5e-93 345.5 256 64.8
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.0e-92 344.0 245 66.1
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.3e-92 343.6 256 68.4
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.2e-92 342.8 245 65.3
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 2.2e-92 342.8 256 64.1
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 2.2e-92 342.8 247 67.2
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 6.5e-92 341.3 248 66.1
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 8.5e-92 340.9 234 72.2
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.1e-91 340.5 246 64.6
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.9e-91 339.7 246 68.3
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.9e-91 339.7 243 70.4
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 2.5e-91 339.3 244 66.8
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.2e-91 339.0 251 66.9
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 3.2e-91 339.0 251 66.9
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 4.2e-91 338.6 265 64.5
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 4.2e-91 338.6 254 66.5
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 5.5e-91 338.2 255 63.1
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 5.5e-91 338.2 231 72.3
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 5.5e-91 338.2 231 71.4
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 7.2e-91 337.8 270 63.0
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 9.4e-91 337.4 255 63.1
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 9.4e-91 337.4 268 60.8
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 1.2e-90 337.0 232 70.7
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 2.1e-90 336.3 270 61.5
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.1e-90 336.3 261 64.0
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 6.1e-90 334.7 280 59.3
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 8.0e-90 334.3 228 71.1
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.4e-89 333.6 254 66.1
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.2e-88 330.5 249 66.3
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.5e-88 330.1 213 74.6
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 2.6e-88 329.3 245 65.7
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 4.4e-88 328.6 247 63.6
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 9.7e-88 327.4 218 74.8
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 4.8e-87 325.1 213 74.2
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 6.3e-87 324.7 216 71.8
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 8.3e-87 324.3 249 65.1
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 5.3e-86 321.6 263 61.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 2.7e-85 319.3 255 63.5
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.8e-84 315.5 319 53.9
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.5e-83 313.5 255 61.6
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 7.2e-83 311.2 213 70.4
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 3.6e-82 308.9 213 70.0
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 6.8e-81 304.7 250 59.2
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 9.8e-80 300.8 239 59.0
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.7e-79 300.1 245 61.2
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 2.8e-79 299.3 249 60.6
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.8e-78 296.6 249 59.0
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 5.4e-78 295.0 263 60.5
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 7.0e-78 294.7 212 67.5
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 3.3e-75 285.8 255 57.3
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.5e-75 285.0 234 62.4
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.6e-74 283.5 245 57.1
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 2.8e-74 282.7 250 58.0
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.7e-74 282.0 250 56.8
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 8.0e-74 281.2 243 57.6
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.0e-72 276.6 254 57.9
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.4e-72 275.8 184 72.3
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.4e-72 275.4 204 64.7
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.3e-71 273.9 196 70.4
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 2.4e-70 269.6 243 56.0
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.2e-70 269.2 305 48.9
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.5e-69 265.4 234 56.8
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 7.8e-69 264.6 189 68.3
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 3.3e-67 259.2 245 52.2
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 4.9e-63 245.4 252 48.4
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.4e-62 243.8 183 61.7
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 5.0e-60 235.3 247 51.4
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 6.6e-60 235.0 244 49.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 6.2e-58 228.4 147 76.2
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.7e-53 213.0 207 56.0
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.0e-52 211.1 234 47.0
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 3.0e-52 209.5 139 73.4
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.4e-49 200.7 187 55.6
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.1e-44 182.2 166 56.0
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 4.9e-39 165.6 122 66.4
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 6.0e-37 158.7 148 57.4
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.7e-36 157.1 105 69.5
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.3e-35 152.9 104 68.3
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 8.1e-34 148.3 238 37.0
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.1e-33 146.4 100 70.0
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.6e-26 124.0 83 72.3
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 1.4e-22 110.9 118 46.6
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 1.4e-22 110.9 118 46.6
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 9.3e-22 108.2 66 75.8
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.8e-20 104.0 82 62.2
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.7e-20 102.1 149 43.6
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.1e-17 94.7 85 55.3
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 2.4e-17 93.6 159 37.7
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.9e-15 86.7 66 59.1
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 3.8e-15 86.3 99 45.5
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.4e-15 85.1 68 58.8
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.0e-13 79.0 63 66.7
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.4e-06 57.8 122 36.1
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.2e-06 56.6 39 69.2


User provided reference genes

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