Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 0.0e+00 1622.1 1112 100.0
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 0.0e+00 1264.2 1116 84.0
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 0.0e+00 1258.0 1107 86.2
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 0.0e+00 1242.3 1107 85.4
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 0.0e+00 1226.1 1100 85.2
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 0.0e+00 1194.1 1146 80.8
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1188.3 1191 78.4
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 0.0e+00 1168.7 1187 77.7
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 0.0e+00 1163.3 1160 78.4
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.1e-305 1053.5 1118 77.0
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 1.1e-273 947.2 967 81.6
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 5.3e-239 832.0 1107 67.9
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 8.6e-205 718.4 672 78.3
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 1.3e-176 624.8 1080 60.8
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.8e-170 604.4 1102 58.0
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 3.5e-166 590.1 1116 58.5
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 5.3e-162 576.2 1123 55.7
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 2.2e-160 570.9 1129 51.3
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.9e-159 567.8 1102 56.9
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 2.1e-158 564.3 1119 52.5
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 2.5e-156 557.4 1138 49.4
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 4.8e-155 553.1 1147 54.6
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.4e-154 551.6 1125 56.4
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.1e-151 542.0 1104 51.4
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 1.4e-151 541.6 1108 46.2
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.3e-149 535.0 1111 51.1
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.8e-149 534.6 1102 55.0
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 5.1e-149 533.1 1078 55.8
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.9e-148 531.2 1102 53.9
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 7.4e-148 529.3 1059 55.6
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.1e-147 527.7 1121 55.9
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 9.0e-146 522.3 1121 55.9
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 4.5e-145 520.0 1120 49.2
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 4.5e-145 520.0 1121 55.8
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 7.6e-145 519.2 1121 54.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 3.0e-141 507.3 1135 52.8
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.1e-140 505.4 1136 52.7
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 4.8e-139 500.0 1100 52.3
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 6.3e-139 499.6 1103 53.3
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 8.2e-139 499.2 1035 58.1
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.4e-138 498.4 1113 55.1
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.4e-138 498.4 1109 48.5
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 2.4e-138 497.7 1180 46.6
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 4.1e-138 496.9 1160 53.2
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 3.4e-137 493.8 1028 57.9
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 1.0e-136 492.3 1107 55.4
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.7e-136 491.5 1094 55.1
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 8.4e-136 489.2 1109 52.4
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 9.3e-135 485.7 256 93.8
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 2.1e-134 484.6 1110 54.0
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 3.9e-133 480.3 1099 53.9
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.7e-132 476.5 1139 52.8
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 5.7e-132 476.5 1109 48.4
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 8.2e-131 472.6 1122 53.0
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 3.1e-130 470.7 1066 54.2
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 5.3e-130 469.9 1136 54.5
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 2.6e-129 467.6 1085 52.0
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 7.7e-129 466.1 934 55.7
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.3e-128 465.3 1162 51.2
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 2.5e-127 461.1 1163 50.9
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 1.6e-126 458.4 1197 45.3
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 3.6e-126 457.2 1091 53.0
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 3.6e-126 457.2 1123 51.6
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 4.6e-126 456.8 1144 52.1
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.1e-126 456.4 1101 52.6
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 3.0e-125 454.1 1106 52.7
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.1e-124 452.2 814 59.2
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.5e-124 451.8 1085 51.8
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.5e-124 451.8 1092 54.1
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 3.7e-123 447.2 1112 53.5
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 3.1e-122 444.1 1124 53.6
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 9.1e-122 442.6 831 55.2
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.2e-121 442.2 686 72.9
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 6.5e-120 436.4 1138 53.1
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 1.2e-118 432.2 1154 51.3
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.1e-118 431.4 1154 52.9
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 6.7e-117 426.4 1111 50.9
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 3.7e-115 420.6 1120 52.9
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 3.7e-115 420.6 1102 52.3
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 4.1e-114 417.2 1104 51.4
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.3e-112 412.1 1106 50.0
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 2.2e-112 411.4 1154 45.7
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 3.8e-112 410.6 818 62.2
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 8.5e-112 409.5 499 69.9
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 2.5e-111 407.9 865 60.0
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 3.6e-110 404.1 764 58.6
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 2.0e-108 398.3 1037 46.3
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 3.3e-108 397.5 1086 52.3
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 4.1e-106 390.6 1182 49.6
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.5e-103 381.3 704 67.8
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.4e-101 375.6 936 42.8
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 5.2e-101 373.6 1138 50.4
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 4.8e-99 367.1 1098 50.7
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 6.3e-99 366.7 698 61.5
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.5e-95 355.5 1104 49.7
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 1.4e-90 339.0 958 47.6
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.1e-79 302.8 718 49.7
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.4e-76 291.2 1019 51.7
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 4.4e-52 211.1 164 62.8
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.9e-51 208.4 697 47.5
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 5.6e-47 194.1 256 85.2
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 5.3e-45 187.6 247 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 2.2e-43 182.2 714 57.1
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 6.4e-43 180.6 332 60.8
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.1e-39 169.9 277 75.1
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.5e-39 169.5 703 45.0
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 2.5e-39 168.7 256 80.1
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.7e-35 156.0 278 37.8
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.8e-35 154.8 286 35.7
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.3e-32 146.4 716 53.9
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 2.3e-32 145.6 738 53.3
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.3e-32 145.6 123 59.3
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.7e-32 144.1 268 73.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.0e-29 134.8 101 62.4
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.2e-26 124.8 109 56.9
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 7.9e-25 120.6 654 51.7
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 5.7e-23 114.4 287 27.9
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.4e-23 114.0 129 49.6
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.7e-19 102.8 107 46.7
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 6.5e-19 100.9 94 48.9
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.1e-18 100.1 99 73.7
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 6.1e-17 94.4 109 49.5
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 5.9e-12 77.8 61 62.3
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 2.9e-11 75.5 252 27.4
SMO301G0041 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 7.4e-07 60.8 46 60.9
SMO245G0010 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 1.3e-06 60.1 41 68.3


User provided reference genes

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