Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g31920 Schrenkiella parvula HOM05D003087 ORTHO05D003312 3.9e-148 528.1 267 100.0
Thhalv10027438m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 4.4e-99 365.2 252 71.4
C07p60200 Brassica napus HOM05D003087 ORTHO05D003312 9.2e-97 357.5 262 66.8
BolC7t46461H Brassica oleracea HOM05D003087 ORTHO05D003312 9.2e-97 357.5 262 66.8
A03p62650 Brassica napus HOM05D003087 ORTHO05D003312 2.7e-96 355.9 262 66.8
BraA03t15334Z Brassica rapa HOM05D003087 ORTHO05D003312 1.7e-95 353.2 262 66.0
AL3G50190 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 3.1e-92 342.4 271 62.4
AT2G17305 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 5.8e-91 338.2 271 61.3
BcaNung03364 Brassica carinata HOM05D003087 ORTHO05D003312 1.7e-90 336.7 262 64.5
Carub.0003s2703 Capsella rubella HOM05D003087 ORTHO05D003312 1.9e-89 333.2 264 64.0
C01p04660 Brassica napus HOM05D003087 ORTHO05D003312 4.2e-81 305.4 261 61.7
BolC1t00449H Brassica oleracea HOM05D003087 ORTHO05D003312 4.2e-81 305.4 261 61.7
BcaNung03799 Brassica carinata HOM05D003087 ORTHO05D003312 2.7e-80 302.8 261 61.3
A01p04270 Brassica napus HOM05D003087 ORTHO05D003312 4.3e-78 295.4 262 61.1
BraA01t00416Z Brassica rapa HOM05D003087 ORTHO05D003312 4.3e-78 295.4 262 61.1
Carub.0003s3127 Capsella rubella HOM05D003087 ORTHO05D003312 5.3e-76 288.5 276 53.6
Sp4g03660 Schrenkiella parvula HOM05D003087 ORTHO05D003312 6.9e-52 208.4 254 42.1
Aa31LG3G10740 Aethionema arabicum HOM05D003087 ORTHO05D003312 1.6e-40 170.6 179 48.0
C04p30780 Brassica napus HOM05D003087 ORTHO05D003312 2.2e-37 160.2 395 30.1
BolC4t24597H Brassica oleracea HOM05D003087 ORTHO05D003312 2.2e-37 160.2 395 30.1
AL5G44970 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 4.8e-37 159.1 382 30.1
BcaC02g10284 Brassica carinata HOM05D003087 ORTHO05D003312 6.3e-37 158.7 395 30.1
CARHR117950 Cardamine hirsuta HOM05D003087 ORTHO05D003312 1.8e-36 157.1 386 28.8
AT3G62230 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 4.1e-36 156.0 366 30.3
Carub.0004s0417 Capsella rubella HOM05D003087 ORTHO05D003312 3.4e-35 152.9 384 27.6
BcaB02g08119 Brassica carinata HOM05D003087 ORTHO05D003312 4.5e-35 152.5 384 29.7
Thhalv10005956m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 7.2e-33 145.2 388 27.6
Thhalv10003202m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 9.4e-33 144.8 351 29.9
A04p00690 Brassica napus HOM05D003087 ORTHO05D003312 1.2e-32 144.4 392 28.8
Sp5g01160 Schrenkiella parvula HOM05D003087 ORTHO05D003312 2.1e-32 143.7 389 28.8
AT5G54820 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 3.6e-32 142.9 170 44.7
Thhalv10015513m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.4e-31 141.0 155 47.1
BraA04t15788Z Brassica rapa HOM05D003087 ORTHO05D003312 1.8e-31 140.6 384 28.1
Sp6g16760 Schrenkiella parvula HOM05D003087 ORTHO05D003312 3.0e-31 139.8 201 41.8
THA.LOC104812534 Tarenaya hassleriana HOM05D003087 ORTHO05D003312 8.8e-31 138.3 383 29.2
Sp6g16770 Schrenkiella parvula HOM05D003087 ORTHO05D003312 5.7e-30 135.6 387 29.5
Sp4g04050 Schrenkiella parvula HOM05D003087 ORTHO05D003312 9.7e-30 134.8 188 42.6
Carub.0005s2895 Capsella rubella HOM05D003087 ORTHO05D003312 3.7e-29 132.9 392 27.6
Sp6g16780 Schrenkiella parvula HOM05D003087 ORTHO05D003312 3.7e-29 132.9 336 29.8
AL8G30260 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 8.2e-29 131.7 170 42.4
A02p13580 Brassica napus HOM05D003087 ORTHO05D003312 1.1e-28 131.3 185 40.0
BraA02t06416Z Brassica rapa HOM05D003087 ORTHO05D003312 1.1e-28 131.3 185 40.0
BcaC03g14738 Brassica carinata HOM05D003087 ORTHO05D003312 5.3e-28 129.0 185 39.5
C02p21890 Brassica napus HOM05D003087 ORTHO05D003312 5.3e-28 129.0 185 39.5
BolC2t08321H Brassica oleracea HOM05D003087 ORTHO05D003312 5.3e-28 129.0 185 39.5
BcaC01g06328 Brassica carinata HOM05D003087 ORTHO05D003312 1.2e-27 127.9 185 38.4
C03p16770 Brassica napus HOM05D003087 ORTHO05D003312 1.2e-27 127.9 185 38.4
Sp6g13720 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.6e-27 127.5 171 41.5
Thhalv10015855m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 2.0e-27 127.1 396 26.8
A06p35460 Brassica napus HOM05D003087 ORTHO05D003312 2.6e-27 126.7 185 40.0
BraA06t26469Z Brassica rapa HOM05D003087 ORTHO05D003312 2.6e-27 126.7 185 40.0
A03p14390 Brassica napus HOM05D003087 ORTHO05D003312 7.7e-27 125.2 185 37.8
BraA03t10736Z Brassica rapa HOM05D003087 ORTHO05D003312 7.7e-27 125.2 185 37.8
Atru.chr2.3270 Acer truncatum HOM05D003087 ORTHO05D003312 1.3e-26 124.4 187 39.6
A07p32700 Brassica napus HOM05D003087 ORTHO05D003312 1.3e-26 124.4 185 38.4
BraA07t30896Z Brassica rapa HOM05D003087 ORTHO05D003312 1.3e-26 124.4 185 38.4
BolC3t14097H Brassica oleracea HOM05D003087 ORTHO05D003312 3.8e-26 122.9 185 37.3
Carub.0004s0399 Capsella rubella HOM05D003087 ORTHO05D003312 8.5e-26 121.7 160 38.8
Thhalv10015307m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.1e-25 121.3 364 26.1
BcaB03g16179 Brassica carinata HOM05D003087 ORTHO05D003312 4.2e-25 119.4 179 38.5
AL8G30250 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 7.2e-25 118.6 169 37.9
Manes.03G091400 Manihot esculenta HOM05D003087 ORTHO05D003312 7.2e-25 118.6 171 40.9
BolC6t38982H Brassica oleracea HOM05D003087 ORTHO05D003312 9.4e-25 118.2 185 38.4
Sabra11G0122300 Salix brachista HOM05D003087 ORTHO05D003312 9.4e-25 118.2 186 38.2
C06p38890 Brassica napus HOM05D003087 ORTHO05D003312 2.1e-24 117.1 185 37.3
AL1G66030 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 3.6e-24 116.3 161 40.4
BcaB03g16176 Brassica carinata HOM05D003087 ORTHO05D003312 3.6e-24 116.3 175 38.3
BcaC07g40126 Brassica carinata HOM05D003087 ORTHO05D003312 3.6e-24 116.3 166 39.2
Thhalv10015433m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 3.6e-24 116.3 170 40.0
Sabra16G0285500 Salix brachista HOM05D003087 ORTHO05D003312 3.6e-24 116.3 171 39.8
Thhalv10015702m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 4.7e-24 115.9 187 36.4
Carub.0004s0398 Capsella rubella HOM05D003087 ORTHO05D003312 8.0e-24 115.2 222 32.9
AT1G56400 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 1.4e-23 114.4 161 39.8
BcaB01g04327 Brassica carinata HOM05D003087 ORTHO05D003312 1.4e-23 114.4 166 38.6
BcaB01g04331 Brassica carinata HOM05D003087 ORTHO05D003312 1.4e-23 114.4 167 40.1
CARHR265840 Cardamine hirsuta HOM05D003087 ORTHO05D003312 2.3e-23 113.6 232 34.1
Potri.001G420500 Populus trichocarpa HOM05D003087 ORTHO05D003312 3.0e-23 113.2 157 42.7
Carub.0005s0836 Capsella rubella HOM05D003087 ORTHO05D003312 4.0e-23 112.8 226 34.5
Manes.03G091200 Manihot esculenta HOM05D003087 ORTHO05D003312 5.2e-23 112.5 158 39.9
Manes.15G074400 Manihot esculenta HOM05D003087 ORTHO05D003312 5.2e-23 112.5 162 37.0
Sp6g13710 Schrenkiella parvula HOM05D003087 ORTHO05D003312 8.8e-23 111.7 173 40.5
Cpa.g.sc97.41 Carica papaya HOM05D003087 ORTHO05D003312 2.0e-22 110.5 216 33.8
Duzib268G1323 Durio zibethinus HOM05D003087 ORTHO05D003312 2.6e-22 110.2 176 34.7
TWI38G0929 Tripterygium wilfordii HOM05D003087 ORTHO05D003312 5.7e-22 109.0 386 24.9
Sp4g05500 Schrenkiella parvula HOM05D003087 ORTHO05D003312 9.7e-22 108.2 140 42.9
Carub.0008s1509 Capsella rubella HOM05D003087 ORTHO05D003312 1.3e-21 107.8 179 39.1
AT3G29830 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 2.2e-21 107.1 180 35.0
Thhalv10015804m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 2.8e-21 106.7 312 30.1
C02p21910 Brassica napus HOM05D003087 ORTHO05D003312 1.1e-20 104.8 158 36.7
CiPaw.11G186600 Carya illinoinensis HOM05D003087 ORTHO05D003312 1.4e-20 104.4 203 33.5
Glyma.14G025750 Glycine max HOM05D003087 ORTHO05D003312 1.8e-20 104.0 178 37.1
Potri.011G136200 Populus trichocarpa HOM05D003087 ORTHO05D003312 4.1e-20 102.8 219 32.9
BcaB08g35406 Brassica carinata HOM05D003087 ORTHO05D003312 9.1e-20 101.7 135 41.5
Eucgr.L03287 Eucalyptus grandis HOM05D003087 ORTHO05D003312 1.2e-19 101.3 194 32.5
BolC2t08323H Brassica oleracea HOM05D003087 ORTHO05D003312 1.6e-19 100.9 144 36.8
Manes.03G127400 Manihot esculenta HOM05D003087 ORTHO05D003312 1.6e-19 100.9 133 36.8
Thhalv10003319m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 7.7e-19 98.6 160 38.1
Lj6g0025252 Lotus japonicus HOM05D003087 ORTHO05D003312 1.0e-18 98.2 183 34.4
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 1.3e-18 97.8 154 37.0
Prupe.4G208300 Prunus persica HOM05D003087 ORTHO05D003312 2.2e-18 97.1 201 31.8
Oeu020132.1 Olea europaea HOM05D003087 ORTHO05D003312 3.8e-18 96.3 153 39.2
MELO3C003962.2 Cucumis melo HOM05D003087 ORTHO05D003312 6.5e-18 95.5 179 35.8
Lj5g0022613 Lotus japonicus HOM05D003087 ORTHO05D003312 6.5e-18 95.5 160 36.2
Atru.chr2.3272 Acer truncatum HOM05D003087 ORTHO05D003312 1.1e-17 94.7 207 32.4
Actinidia05111 Actinidia chinensis HOM05D003087 ORTHO05D003312 1.1e-17 94.7 151 36.4
Lalb_Chr02g0152671 Lupinus albus HOM05D003087 ORTHO05D003312 1.5e-17 94.4 171 38.0
Medtr3g448340 Medicago truncatula HOM05D003087 ORTHO05D003312 3.2e-17 93.2 234 32.1
TPR.G37757 Trifolium pratense HOM05D003087 ORTHO05D003312 4.2e-17 92.8 215 31.2
Cfa020391 Carpinus fangiana HOM05D003087 ORTHO05D003312 5.5e-17 92.4 178 34.8
CANSAT78G0127 Cannabis sativa HOM05D003087 ORTHO05D003312 7.2e-17 92.0 174 32.8
MD11G1223200 Malus domestica HOM05D003087 ORTHO05D003312 7.2e-17 92.0 153 34.0
QL08p012142 Quercus lobata HOM05D003087 ORTHO05D003312 1.6e-16 90.9 152 36.2
Prupe.4G208200 Prunus persica HOM05D003087 ORTHO05D003312 2.1e-16 90.5 176 29.0
QL08p012174 Quercus lobata HOM05D003087 ORTHO05D003312 2.7e-16 90.1 150 34.7
Lj1C869T9 Lonicera japonica HOM05D003087 ORTHO05D003312 3.6e-16 89.7 140 39.3
QL08p011993 Quercus lobata HOM05D003087 ORTHO05D003312 3.6e-16 89.7 150 34.7
Rhsim06G0214600 Rhododendron simsii HOM05D003087 ORTHO05D003312 6.1e-16 89.0 173 33.5
Atru.chr2.3271 Acer truncatum HOM05D003087 ORTHO05D003312 1.0e-15 88.2 162 36.4
Cfa020390 Carpinus fangiana HOM05D003087 ORTHO05D003312 2.3e-15 87.0 184 34.2
Glyma.02G289100 Glycine max HOM05D003087 ORTHO05D003312 2.3e-15 87.0 189 33.9
LjContig00272g0016451 Lotus japonicus HOM05D003087 ORTHO05D003312 4.0e-15 86.3 184 27.7
MD11G1222800 Malus domestica HOM05D003087 ORTHO05D003312 6.8e-15 85.5 177 29.4
Medtr1g090907 Medicago truncatula HOM05D003087 ORTHO05D003312 6.8e-15 85.5 178 30.3
arahy.Tifrunner.gnm1.ann1.BT26ZR Arachis hypogaea HOM05D003087 ORTHO05D003312 8.8e-15 85.1 178 28.7
Migut.M01788 Erythranthe guttata HOM05D003087 ORTHO05D003312 8.8e-15 85.1 131 36.6
arahy.Tifrunner.gnm1.ann1.ELS2X1 Arachis hypogaea HOM05D003087 ORTHO05D003312 3.4e-14 83.2 182 30.2
arahy.Tifrunner.gnm1.ann1.RJB6DE Arachis hypogaea HOM05D003087 ORTHO05D003312 3.4e-14 83.2 178 29.2
MD03G1208600 Malus domestica HOM05D003087 ORTHO05D003312 3.4e-14 83.2 165 29.7
Psat5g183360 Pisum sativum HOM05D003087 ORTHO05D003312 3.4e-14 83.2 154 32.5
Lj5g0027658 Lotus japonicus HOM05D003087 ORTHO05D003312 4.4e-14 82.8 148 34.5
CARHR054070 Cardamine hirsuta HOM05D003087 ORTHO05D003312 5.7e-14 82.4 328 27.4
Phvul.008G265200 Phaseolus vulgaris HOM05D003087 ORTHO05D003312 5.7e-14 82.4 178 33.1
Psat6g174320 Pisum sativum HOM05D003087 ORTHO05D003312 5.7e-14 82.4 179 28.5
Psat6g174360 Pisum sativum HOM05D003087 ORTHO05D003312 9.8e-14 81.6 221 27.1
Medtr2g048140 Medicago truncatula HOM05D003087 ORTHO05D003312 1.3e-13 81.3 178 29.2
Glyma.10G200400 Glycine max HOM05D003087 ORTHO05D003312 4.8e-13 79.3 155 32.9
LjContig00272g0019978 Lotus japonicus HOM05D003087 ORTHO05D003312 6.3e-13 79.0 195 28.2
Cpa.g.sc97.39 Carica papaya HOM05D003087 ORTHO05D003312 1.1e-12 78.2 110 37.3
Haze_09620 Corylus avellana HOM05D003087 ORTHO05D003312 1.1e-12 78.2 166 32.5
Prupe.4G208100 Prunus persica HOM05D003087 ORTHO05D003312 1.1e-12 78.2 191 29.3
TPR.G23589 Trifolium pratense HOM05D003087 ORTHO05D003312 1.1e-12 78.2 196 27.6
CSS0040473 Camellia sinensis var. sinensis HOM05D003087 ORTHO05D003312 1.8e-12 77.4 143 35.0
Eucgr.F00967 Eucalyptus grandis HOM05D003087 ORTHO05D003312 1.8e-12 77.4 110 37.3
arahy.Tifrunner.gnm1.ann1.U37KZ8 Arachis hypogaea HOM05D003087 ORTHO05D003312 2.4e-12 77.0 176 28.4
Hma1.2p1_1271F.1_g271870 Hydrangea macrophylla HOM05D003087 ORTHO05D003312 5.4e-12 75.9 167 32.3
LjContig00272g0016156 Lotus japonicus HOM05D003087 ORTHO05D003312 9.1e-12 75.1 159 28.3
AL5G20200 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 1.6e-11 74.3 293 23.5
RcHm_v2.0_Chr1g0363631 Rosa chinensis HOM05D003087 ORTHO05D003312 5.9e-11 72.4 176 31.2
Medtr5g066890 Medicago truncatula HOM05D003087 ORTHO05D003312 1.7e-10 70.9 84 41.7
Medtr7g029260 Medicago truncatula HOM05D003087 ORTHO05D003312 2.9e-10 70.1 122 31.1
CDE05G0823 Ceratophyllum demersum HOM05D003087 ORTHO05D003312 6.5e-10 68.9 158 26.6
BcaB01g04328 Brassica carinata HOM05D003087 ORTHO05D003312 4.2e-09 66.2 92 38.0
BcaB01g04329 Brassica carinata HOM05D003087 ORTHO05D003312 4.2e-09 66.2 92 38.0
Carub.0004s2753 Capsella rubella HOM05D003087 ORTHO05D003312 9.4e-09 65.1 105 30.5
Cpa.g.sc97.42 Carica papaya HOM05D003087 ORTHO05D003312 9.4e-09 65.1 75 40.0
Medtr1g090903 Medicago truncatula HOM05D003087 ORTHO05D003312 1.6e-08 64.3 143 28.7
Medtr3g049530 Medicago truncatula HOM05D003087 ORTHO05D003312 3.6e-08 63.2 257 26.5
Duzib170G0141 Durio zibethinus HOM05D003087 ORTHO05D003312 4.7e-08 62.8 91 36.3
TAR624G0459 Trochodendron aralioides HOM05D001396 ORTHO05D000493 8.0e-08 62.0 234 26.1
Nn1g03911 Nelumbo nucifera HOM05D000576 ORTHO05D003312 1.0e-07 61.6 159 25.8
TAR624G1446 Trochodendron aralioides HOM05D001396 ORTHO05D000493 5.2e-07 59.3 154 25.3
BcaC03g14740 Brassica carinata HOM05D003087 ORTHO05D003312 8.8e-07 58.5 86 36.0
EL10Ac4g07903 Beta vulgaris HOM05D003087 ORTHO05D003312 1.2e-06 58.2 195 28.2
LjContig00272g0017385 Lotus japonicus HOM05D003087 ORTHO05D003312 1.2e-06 58.2 87 35.6
LjContig00272g0021764 Lotus japonicus HOM05D003087 ORTHO05D003312 1.2e-06 58.2 87 35.6
HPP92_016299 Vanilla planifolia HOM05D005918 ORTHO05D008619 3.4e-06 56.6 219 26.0
Nn1g06755 Nelumbo nucifera HOM05D001396 ORTHO05D000493 5.7e-06 55.8 145 26.2
HPP92_016317 Vanilla planifolia HOM05D000051 ORTHO05D000493 5.7e-06 55.8 220 26.4
Aqoxy7G01129 Aquilegia oxysepala HOM05D001396 ORTHO05D000493 7.5e-06 55.5 94 29.8
Eucgr.F00966 Eucalyptus grandis HOM05D003087 ORTHO05D003312 7.5e-06 55.5 180 28.9


User provided reference genes

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