Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.8e-103 378.3 199 100.0
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.2e-93 346.7 199 91.5
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 3.5e-93 345.1 197 90.9
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 3.3e-91 338.6 202 90.1
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 3.3e-91 338.6 202 90.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 7.4e-91 337.4 206 86.9
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 7.4e-91 337.4 206 86.9
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.3e-90 336.7 198 87.4
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 2.4e-89 332.4 198 87.4
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.1e-89 332.0 198 85.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 4.0e-89 331.6 202 89.6
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 4.0e-89 331.6 202 89.6
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.7e-87 326.2 198 84.3
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.2e-87 325.9 199 83.4
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.3e-84 316.6 184 90.8
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 9.6e-83 310.5 174 90.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.8e-82 308.9 236 71.6
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.6e-72 274.2 185 75.1
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.0e-71 273.9 174 77.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.9e-71 272.3 185 74.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.5e-71 270.8 186 74.2
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 8.5e-71 270.8 174 77.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.1e-70 270.4 190 71.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.9e-70 269.6 193 70.5
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.5e-70 269.2 186 72.0
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 7.2e-70 267.7 188 71.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 7.2e-70 267.7 170 80.0
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.3e-70 267.3 167 78.4
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.1e-69 266.2 193 71.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.6e-69 265.4 172 77.9
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 4.6e-69 265.0 173 76.3
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 6.1e-69 264.6 172 75.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 6.1e-69 264.6 185 73.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 7.9e-69 264.2 172 75.6
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 6.7e-68 261.2 171 76.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.1e-67 260.4 190 69.5
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.5e-67 260.0 195 67.2
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.5e-67 259.2 197 66.0
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 7.4e-67 257.7 175 72.0
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 9.7e-67 257.3 176 73.3
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 9.7e-67 257.3 188 68.1
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.6e-66 256.5 181 72.9
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.6e-66 256.5 190 69.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 3.7e-66 255.4 175 74.9
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 6.3e-66 254.6 170 74.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 8.2e-66 254.2 175 69.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-65 253.8 193 69.9
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.1e-65 253.8 168 75.6
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.8e-65 253.1 200 67.5
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.8e-65 253.1 174 72.4
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.4e-65 252.7 194 67.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.1e-65 252.3 195 68.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 9.1e-65 250.8 167 73.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 9.1e-65 250.8 188 67.6
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.5e-64 250.0 192 65.1
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.5e-64 250.0 172 69.8
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.0e-64 249.6 195 67.2
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.4e-64 248.8 185 65.4
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 3.4e-64 248.8 166 73.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 3.4e-64 248.8 150 80.0
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 7.7e-64 247.7 189 65.1
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.0e-63 247.3 192 64.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.3e-63 246.9 164 74.4
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.3e-63 246.9 160 76.9
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.7e-63 246.5 169 71.0
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.7e-63 246.5 180 68.9
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.9e-63 245.7 183 68.3
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.8e-63 245.4 191 63.9
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 3.8e-63 245.4 178 68.0
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-62 243.8 163 74.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.4e-62 243.4 193 64.8
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.4e-62 243.4 174 66.7
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.9e-62 243.0 175 68.0
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.5e-62 242.7 183 66.1
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 3.2e-62 242.3 188 63.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 4.2e-62 241.9 178 67.4
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 5.5e-62 241.5 190 65.8
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 5.5e-62 241.5 175 68.0
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.2e-61 240.4 181 67.4
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.6e-61 240.0 174 68.4
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 6.1e-61 238.0 186 65.6
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 7.9e-61 237.7 177 64.4
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.4e-60 236.9 172 69.8
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 3.0e-60 235.7 172 69.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.8e-60 234.2 194 66.0
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.1e-59 233.8 164 68.3
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.1e-59 233.8 189 61.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.0e-59 233.0 178 68.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.0e-59 233.0 174 66.7
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.6e-59 232.6 180 65.6
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.3e-59 232.3 193 60.1
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 3.3e-59 232.3 203 59.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.4e-59 231.9 198 61.6
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.4e-59 231.9 194 62.9
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 7.4e-59 231.1 195 60.5
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 7.4e-59 231.1 192 67.7
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 7.4e-59 231.1 197 58.4
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 9.7e-59 230.7 192 58.9
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.7e-58 229.9 181 66.9
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.2e-58 229.6 171 67.3
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.8e-58 228.4 223 58.3
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 6.3e-58 228.0 171 65.5
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.1e-57 227.3 177 64.4
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.8e-57 226.5 168 66.7
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.8e-57 226.5 173 64.2
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.8e-57 226.5 173 64.2
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.4e-57 226.1 192 60.9
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.1e-57 225.3 190 63.2
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.2e-56 223.8 178 64.0
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.5e-56 223.4 169 63.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.4e-56 222.2 189 61.9
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 4.5e-56 221.9 215 55.8
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.7e-56 221.1 157 68.8
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.0e-55 220.7 191 60.2
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.2e-55 219.5 167 65.3
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 5.0e-55 218.4 169 65.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.5e-54 214.9 184 63.6
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 9.4e-54 214.2 173 62.4
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.0e-52 210.7 190 56.8
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.3e-52 209.5 181 60.2
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.8e-50 201.8 142 70.4
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.3e-47 193.7 167 59.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 3.6e-45 185.7 177 55.9
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.0e-43 179.9 219 48.9
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.3e-42 177.2 167 55.1
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 4.8e-42 175.3 153 58.8
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.8e-41 173.3 156 53.8
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.4e-41 172.9 182 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.7e-39 166.8 188 48.9
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 6.1e-37 158.3 103 74.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.8e-34 149.4 176 46.6
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 7.7e-32 141.4 102 67.6
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 5.0e-31 138.7 93 68.8
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 6.5e-31 138.3 95 69.5
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.5e-31 138.3 125 57.6
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.1e-30 137.5 90 73.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.5e-30 137.1 170 44.1
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.9e-30 136.7 99 69.7
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.2e-30 135.6 109 63.3
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 4.2e-30 135.6 165 46.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 9.5e-30 134.4 145 51.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-29 134.0 84 75.0
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 4.9e-26 122.1 90 67.8
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.0e-24 116.7 83 72.3
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.7e-23 113.6 101 61.4
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.6e-21 105.9 63 84.1
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 3.6e-21 105.9 154 46.8
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 8.9e-20 101.3 68 72.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.6e-19 99.8 167 41.3
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.4e-19 99.4 81 60.5
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.8e-16 88.2 48 95.8
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.5e-14 83.2 137 34.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 5.2e-12 75.5 76 50.0
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.7e-10 70.5 47 74.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 2.0e-08 63.5 46 60.9
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.0e-07 61.2 96 39.6
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.9e-07 59.3 44 77.3
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 1.5e-06 57.4 60 55.0
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 9.5e-06 54.7 60 53.3


User provided reference genes

Program Settings