Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 0.0e+00 1412.9 1008 100.0
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 0.0e+00 1192.2 1008 89.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1184.1 1022 89.1
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1170.2 1008 88.6
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1169.8 1008 87.2
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 0.0e+00 1167.5 1011 86.8
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1156.4 1001 88.5
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 0.0e+00 1152.5 1011 86.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 0.0e+00 1150.2 1009 87.9
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1126.3 1014 86.9
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1123.6 1019 86.4
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1119.4 1014 86.1
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1117.8 1012 86.2
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 0.0e+00 1107.4 1009 84.9
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 0.0e+00 1096.3 1019 83.0
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.4e-262 910.2 1021 70.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.2e-252 876.3 934 74.3
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 2.3e-249 866.3 926 73.4
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-248 864.0 890 76.6
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 3.7e-247 859.0 934 73.7
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.1e-246 855.9 926 73.3
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.0e-240 836.6 888 75.3
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 4.1e-238 828.9 886 74.0
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 3.8e-236 822.4 886 74.0
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 3.8e-236 822.4 886 74.0
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.8e-223 779.6 887 73.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 5.0e-220 768.8 1034 65.2
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 6.1e-218 761.9 1036 64.8
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.0e-217 761.1 1036 60.4
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.8e-215 753.1 922 65.0
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 4.2e-211 739.2 1043 62.6
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 5.7e-208 728.8 1018 58.6
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.4e-206 724.2 1014 61.0
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.7e-205 719.9 1026 63.9
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 8.6e-204 714.9 1034 62.3
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.9e-203 713.8 1026 63.7
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 5.6e-203 712.2 1034 62.9
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.6e-202 709.5 1022 61.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.0e-201 706.1 1029 61.1
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-200 704.5 1041 62.1
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.2e-200 704.5 1050 62.6
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.5e-200 704.1 1029 63.8
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 2.0e-200 703.7 1022 63.8
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.9e-199 699.9 1027 63.5
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 3.2e-198 696.4 1042 62.7
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 3.2e-198 696.4 969 64.5
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 9.2e-198 694.9 1023 62.6
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.6e-197 694.1 1107 57.2
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.5e-197 693.0 1023 62.5
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.6e-197 692.6 1033 53.7
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 6.0e-197 692.2 1025 62.3
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 6.0e-197 692.2 1018 57.5
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.7e-196 690.6 1013 63.2
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.2e-194 684.5 912 68.9
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.2e-194 684.5 1034 61.5
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.6e-194 684.1 1021 62.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 3.1e-193 679.9 1076 54.0
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 8.9e-193 678.3 901 62.6
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.0e-192 677.2 912 66.1
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 4.4e-192 676.0 902 68.2
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.7e-191 674.1 1021 62.0
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.9e-191 673.3 1017 63.4
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 6.4e-191 672.2 913 67.0
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 6.4e-191 672.2 880 69.9
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.4e-190 671.0 1038 61.6
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 7.1e-190 668.7 912 66.0
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.7e-189 666.8 1007 58.9
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.0e-188 664.8 805 66.1
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.3e-188 663.7 1013 60.9
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 3.9e-188 662.9 1018 57.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 5.1e-188 662.5 912 67.8
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 6.6e-188 662.1 802 73.9
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.5e-187 661.0 887 66.0
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.9e-187 660.6 890 64.7
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.5e-187 660.2 897 68.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.2e-186 657.9 876 58.4
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.2e-186 657.9 801 68.9
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 2.8e-186 656.8 802 73.3
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 8.1e-186 655.2 1007 54.1
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.1e-185 653.3 890 67.8
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.2e-185 652.5 890 67.8
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.6e-184 650.2 885 66.8
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 2.6e-184 650.2 888 65.7
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 3.4e-184 649.8 915 69.0
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.4e-184 649.8 806 70.7
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 2.9e-183 646.7 884 66.5
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.9e-183 646.7 951 65.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 6.4e-183 645.6 908 65.1
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 8.4e-183 645.2 882 65.8
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 1.9e-182 644.0 1032 55.4
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.4e-182 643.7 1015 59.6
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 9.2e-182 641.7 876 65.9
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 9.2e-182 641.7 913 63.7
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 8.6e-180 635.2 936 61.5
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 5.6e-179 632.5 1009 61.2
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-178 630.9 1032 61.7
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.1e-178 630.6 908 65.7
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 3.6e-178 629.8 932 59.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 8.1e-178 628.6 886 66.3
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.8e-177 627.5 804 65.5
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 3.1e-177 626.7 804 65.5
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 6.8e-177 625.5 820 66.7
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 8.9e-177 625.2 799 69.6
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.2e-176 624.8 940 61.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 2.0e-176 624.0 1028 55.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.6e-176 623.6 805 66.2
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.4e-176 623.2 907 65.3
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 4.4e-176 622.9 878 65.8
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.8e-176 622.5 802 69.3
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.3e-175 621.3 876 65.5
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.3e-175 621.3 1020 57.1
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.2e-175 620.5 858 67.4
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.9e-175 620.2 878 62.9
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.9e-175 620.2 804 66.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 3.2e-174 616.7 921 62.2
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.4e-174 615.9 1001 60.5
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.6e-173 612.8 929 63.0
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.0e-172 611.7 879 66.0
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.3e-172 610.5 1021 58.6
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.8e-170 603.6 904 56.0
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 8.1e-170 602.1 795 70.1
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 5.8e-168 595.9 803 68.5
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 6.4e-167 592.4 767 66.4
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 3.2e-166 590.1 803 70.5
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 9.3e-166 588.6 1009 49.8
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 4.6e-165 586.3 800 69.0
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.6e-163 578.6 901 62.2
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 9.0e-161 572.0 806 58.2
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 9.9e-160 568.5 800 65.5
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.9e-155 554.3 888 55.9
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.9e-150 537.7 847 63.6
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 6.7e-148 529.3 1006 51.1
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.5e-147 527.3 1023 49.0
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.6e-146 524.6 898 58.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.7e-143 514.6 740 61.9
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.9e-143 513.8 685 75.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.2e-138 497.7 786 60.7
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.5e-136 491.5 944 55.0
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.5e-136 490.0 797 64.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 7.2e-134 482.6 803 61.3
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.1e-132 476.5 684 64.3
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 7.2e-126 456.1 779 48.1
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.4e-115 420.2 892 50.0
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 7.5e-115 419.5 727 58.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.1e-113 413.7 938 44.8
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-110 405.6 649 73.2
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.2e-110 403.7 899 47.9
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.6e-104 385.2 797 50.9
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 7.7e-104 382.9 822 55.2
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.0e-100 372.5 729 54.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.8e-92 345.1 906 45.3
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 5.2e-92 343.6 644 70.5
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.2e-90 338.2 892 32.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 3.9e-87 327.4 929 46.6
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.8e-84 318.5 450 52.7
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 5.2e-84 317.0 533 57.6
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.2e-84 317.0 747 48.7
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.9e-82 311.2 430 50.7
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 7.8e-80 303.1 421 51.8
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.9e-78 298.5 646 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.7e-71 275.4 605 58.8
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 4.0e-68 264.2 490 43.1
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 5.8e-67 260.4 259 63.3
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 6.2e-53 213.8 221 52.9
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 4.5e-51 207.6 309 72.5
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 2.1e-48 198.7 137 71.5
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 5.3e-44 184.1 330 36.1
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.7e-37 161.4 241 44.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.3e-31 142.1 88 79.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.1e-28 133.3 119 59.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.8e-28 132.5 71 85.9
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.3e-26 126.3 123 55.3
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 4.6e-24 117.9 149 57.0
C01p05870 Brassica napus HOM05D000903 ORTHO05D000731 5.1e-23 114.4 162 50.0
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.3e-15 89.0 230 79.6
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 6.3e-13 80.9 189 33.9
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.5e-11 74.7 62 56.5
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 5.9e-11 74.3 66 60.6


User provided reference genes

Program Settings