Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g30870 Schrenkiella parvula HOM05D011012 ORTHO05D011368 1.4e-111 406.4 214 100.0
Thhalv10027222m.g Eutrema salsugineum HOM05D011012 ORTHO05D011368 7.9e-99 364.0 212 90.6
A01p05080 Brassica napus HOM05D011012 ORTHO05D011368 5.7e-97 357.8 214 90.2
BcaC09g52116 Brassica carinata HOM05D011012 ORTHO05D011368 2.8e-96 355.5 214 89.7
C01p05550 Brassica napus HOM05D011012 ORTHO05D011368 8.2e-96 354.0 214 89.3
BraA01t00490Z Brassica rapa HOM05D011012 ORTHO05D011368 1.8e-95 352.8 216 89.4
Carub.0007s0733 Capsella rubella HOM05D011012 ORTHO05D011368 1.8e-95 352.8 215 87.9
BolC1t00535H Brassica oleracea HOM05D011012 ORTHO05D011368 9.0e-95 350.5 216 88.9
AL7G18440 Arabidopsis lyrata HOM05D011012 ORTHO05D011368 4.5e-94 348.2 214 86.0
CARHR241150 Cardamine hirsuta HOM05D011012 ORTHO05D011368 1.9e-92 342.8 213 86.4
THA.LOC104803715 Tarenaya hassleriana HOM05D011012 ORTHO05D011368 1.8e-63 246.5 212 68.4
AT4G33130 Arabidopsis thaliana HOM05D011012 ORTHO05D011368 9.4e-60 234.2 137 88.3
Atru.chr7.1800 Acer truncatum HOM05D000370 ORTHO05D006313 5.7e-41 171.8 192 55.7
Potri.006G216800 Populus trichocarpa HOM05D000370 ORTHO05D006313 1.7e-40 170.2 202 52.5
Sabra06G0167200 Salix brachista HOM05D000370 ORTHO05D006313 1.8e-39 166.8 202 52.5
Thecc.09G067700 Theobroma cacao HOM05D000370 ORTHO05D006313 6.6e-37 158.3 218 48.2
Manes.03G054600 Manihot esculenta HOM05D000370 ORTHO05D006313 4.7e-35 152.1 144 59.0
Duzib168G0938 Durio zibethinus HOM05D000370 ORTHO05D006313 6.2e-35 151.8 222 46.8
Duzib187G1680 Durio zibethinus HOM05D000370 ORTHO05D006313 3.4e-33 146.0 197 51.8
Gohir.A05G037200 Gossypium hirsutum HOM05D000370 ORTHO05D006313 7.5e-33 144.8 191 51.8
Gorai.001G018600 Gossypium raimondii HOM05D000370 ORTHO05D006313 7.5e-33 144.8 214 46.7
Gohir.D05G038700 Gossypium hirsutum HOM05D000370 ORTHO05D006313 9.8e-33 144.4 191 51.8
Gorai.009G039200 Gossypium raimondii HOM05D000370 ORTHO05D006313 1.3e-32 144.1 191 51.8
GSVIVG01014994001 Vitis vinifera HOM05D000370 ORTHO05D006313 2.3e-29 133.3 180 52.8
Gohir.D07G017900 Gossypium hirsutum HOM05D000370 ORTHO05D006313 5.0e-29 132.1 238 42.0
Eucgr.C00757 Eucalyptus grandis HOM05D000370 ORTHO05D006313 4.0e-26 122.5 196 41.3
BcaC09g52117 Brassica carinata HOM05D011012 ORTHO05D011368 5.2e-26 122.1 73 86.3
Gohir.A07G018100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 5.2e-26 122.1 175 46.9
Ciclev10010792m.g Citrus clementina HOM05D011012 ORTHO05D011368 8.9e-26 121.3 225 44.4
MBI13_g09077_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 2.7e-22 109.8 213 40.4
COL.COLO4_21180 Corchorus olitorius HOM05D000370 ORTHO05D006313 3.0e-21 106.3 114 57.0
SHI27952 Sapria himalayana HOM05D000370 ORTHO05D006313 1.2e-17 94.4 107 53.3
FAN02G0132 Fragaria x ananassa HOM05D000370 ORTHO05D006313 5.8e-17 92.0 103 53.4
FAN02G1594 Fragaria x ananassa HOM05D000370 ORTHO05D006313 5.8e-17 92.0 103 53.4
FAN14G2100 Fragaria x ananassa HOM05D000370 ORTHO05D006313 7.6e-17 91.7 103 52.4
GSVIVG01029452001 Vitis vinifera HOM05D000370 ORTHO05D006313 9.9e-17 91.3 118 47.5
FvH4_6g36420 Fragaria vesca HOM05D000370 ORTHO05D006313 1.3e-16 90.9 103 52.4
Gohir.A05G116100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.3e-16 90.9 128 47.7
Gohir.D05G117000 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.3e-16 90.9 128 47.7
Gorai.009G121000 Gossypium raimondii HOM05D000370 ORTHO05D006313 1.3e-16 90.9 128 47.7
QL05p089080 Quercus lobata HOM05D000370 ORTHO05D006313 2.9e-16 89.7 96 54.2
Duzib192G0552 Durio zibethinus HOM05D000370 ORTHO05D006313 3.8e-16 89.4 126 46.0
FAN09G0130 Fragaria x ananassa HOM05D000370 ORTHO05D006313 3.8e-16 89.4 103 52.4
Sabra15G0073500 Salix brachista HOM05D011012 ORTHO05D011368 3.8e-16 89.4 93 55.9
FAN05G4541 Fragaria x ananassa HOM05D000370 ORTHO05D006313 4.9e-16 89.0 103 51.5
SEGI_40993 Sequoiadendron giganteum HOM05D000370 ORTHO05D006313 4.9e-16 89.0 119 45.4
Thecc.06G050400 Theobroma cacao HOM05D000370 ORTHO05D006313 4.9e-16 89.0 132 43.9
Nn8g41277 Nelumbo nucifera HOM05D000370 ORTHO05D006313 6.4e-16 88.6 93 55.9
QL08p018247 Quercus lobata HOM05D000370 ORTHO05D006313 6.4e-16 88.6 118 46.6
QL03p048724 Quercus lobata HOM05D000370 ORTHO05D011368 1.4e-15 87.4 96 53.1
TWI12G1236 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 1.4e-15 87.4 111 49.5
CiPaw.02G129400 Carya illinoinensis HOM05D000370 ORTHO05D006313 1.9e-15 87.0 84 57.1
RcHm_v2.0_Chr2g0148391 Rosa chinensis HOM05D000370 ORTHO05D006313 1.9e-15 87.0 128 44.5
CiPaw.01G209200 Carya illinoinensis HOM05D000370 ORTHO05D006313 3.2e-15 86.3 124 43.5
CANSAT01G2135 Cannabis sativa HOM05D000370 ORTHO05D006313 5.4e-15 85.5 121 43.0
BcaC05g29218 Brassica carinata HOM05D000370 ORTHO05D006313 9.2e-15 84.7 130 42.3
C05p54900 Brassica napus HOM05D000370 ORTHO05D006313 9.2e-15 84.7 130 42.3
BolC5t34160H Brassica oleracea HOM05D000370 ORTHO05D006313 9.2e-15 84.7 130 42.3
MD17G1157700 Malus domestica HOM05D000370 ORTHO05D006313 9.2e-15 84.7 105 47.6
Atru.chr3.4086 Acer truncatum HOM05D000370 ORTHO05D006313 1.6e-14 84.0 154 42.2
Potri.007G003900 Populus trichocarpa HOM05D000370 ORTHO05D006313 2.1e-14 83.6 128 41.4
HPP92_027162 Vanilla planifolia HOM05D000370 ORTHO05D006313 2.1e-14 83.6 184 34.2
BraA05t22451Z Brassica rapa HOM05D000370 ORTHO05D006313 2.7e-14 83.2 109 45.0
Eucgr.F04059 Eucalyptus grandis HOM05D000370 ORTHO05D006313 2.7e-14 83.2 118 46.6
MD09G1169500 Malus domestica HOM05D000370 ORTHO05D006313 2.7e-14 83.2 107 46.7
Sed0024696 Sechium edule HOM05D000370 ORTHO05D006313 4.6e-14 82.4 94 51.1
Os06g0692800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 6.0e-14 82.0 159 37.7
PGR102G3330 Punica granatum HOM05D000370 ORTHO05D006313 7.8e-14 81.6 87 52.9
TAR626G1046 Trochodendron aralioides HOM05D000370 ORTHO05D006313 1.3e-13 80.9 101 49.5
Zm00001eb232490 Zea mays HOM05D000370 ORTHO05D006313 1.3e-13 80.9 127 40.9
C03p46040 Brassica napus HOM05D000370 ORTHO05D006313 1.7e-13 80.5 128 38.3
BolC3t16876H Brassica oleracea HOM05D000370 ORTHO05D006313 1.7e-13 80.5 128 38.3
Dinv20314 Davidia involucrata HOM05D000370 ORTHO05D006313 1.7e-13 80.5 119 42.9
THA.LOC104822748 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 1.7e-13 80.5 145 43.4
CARHR017210 Cardamine hirsuta HOM05D000370 ORTHO05D006313 3.0e-13 79.7 122 39.3
Sabra07G0002900 Salix brachista HOM05D000370 ORTHO05D006313 3.0e-13 79.7 148 39.2
Sp3g11160 Schrenkiella parvula HOM05D000370 ORTHO05D006313 3.0e-13 79.7 87 51.7
A05p36500 Brassica napus HOM05D000370 ORTHO05D006313 3.9e-13 79.3 104 45.2
BraA03t12947Z Brassica rapa HOM05D000370 ORTHO05D006313 3.9e-13 79.3 128 39.1
CsaV3_3G018040 Cucumis sativus L. HOM05D000370 ORTHO05D006313 3.9e-13 79.3 131 45.0
Duzib235G0455 Durio zibethinus HOM05D000370 ORTHO05D006313 3.9e-13 79.3 118 44.1
Prupe.3G027500 Prunus persica HOM05D000370 ORTHO05D006313 3.9e-13 79.3 87 51.7
Aa31LG8G240 Aethionema arabicum HOM05D000370 ORTHO05D006313 5.1e-13 79.0 99 49.5
Sed0025802 Sechium edule HOM05D000370 ORTHO05D006313 5.1e-13 79.0 94 48.9
Zm00001eb225950 Zea mays HOM05D000370 ORTHO05D006313 5.1e-13 79.0 100 46.0
MELO3C019563.2 Cucumis melo HOM05D000370 ORTHO05D006313 6.6e-13 78.6 102 48.0
Thhalv10007325m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 6.6e-13 78.6 122 40.2
PSO170G0708 Papaver somniferum HOM05D000370 ORTHO05D006313 8.6e-13 78.2 98 46.9
ATR0626G124 Amborella trichopoda HOM05D000370 ORTHO05D006313 1.1e-12 77.8 128 44.5
Gohir.D05G357412 Gossypium hirsutum HOM05D013611 ORTHO05D011368 1.1e-12 77.8 119 46.2
Gorai.010G042700 Gossypium raimondii HOM05D013611 ORTHO05D011368 1.1e-12 77.8 119 47.9
PSO063G1283 Papaver somniferum HOM05D000370 ORTHO05D006313 1.1e-12 77.8 120 44.2
Thhalv10020358m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 1.9e-12 77.0 128 41.4
BcaB03g13033 Brassica carinata HOM05D000370 ORTHO05D006313 2.5e-12 76.6 117 41.9
A03p37930 Brassica napus HOM05D000370 ORTHO05D006313 2.5e-12 76.6 128 37.5
Ah.08g218000 Amaranthus hybridus HOM05D000370 ORTHO05D006313 3.3e-12 76.3 151 36.4
AT1G16750 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 4.3e-12 75.9 87 48.3
A08p31290 Brassica napus HOM05D000370 ORTHO05D006313 4.3e-12 75.9 139 37.4
BraA08t35052Z Brassica rapa HOM05D000370 ORTHO05D006313 4.3e-12 75.9 139 37.4
CSS0048464 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 4.3e-12 75.9 96 45.8
Sp1g14900 Schrenkiella parvula HOM05D000370 ORTHO05D006313 4.3e-12 75.9 122 39.3
Actinidia38821 Actinidia chinensis HOM05D000370 ORTHO05D006313 7.3e-12 75.1 101 46.5
AUR62001306 Chenopodium quinoa HOM05D000370 ORTHO05D006313 7.3e-12 75.1 119 41.2
Gohir.D04G074332 Gossypium hirsutum HOM05D013611 ORTHO05D011368 7.3e-12 75.1 135 44.4
Zm00001eb273360 Zea mays HOM05D000370 ORTHO05D006313 7.3e-12 75.1 87 46.0
CARHR087550 Cardamine hirsuta HOM05D000370 ORTHO05D006313 1.2e-11 74.3 87 50.6
Manes.14G000500 Manihot esculenta HOM05D000370 ORTHO05D006313 1.2e-11 74.3 87 49.4
AL3G24720 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 1.6e-11 73.9 87 49.4
BcaC07g38812 Brassica carinata HOM05D000370 ORTHO05D006313 1.6e-11 73.9 117 41.0
Cpa.g.sc82.38 Carica papaya HOM05D000370 ORTHO05D006313 1.6e-11 73.9 149 37.6
AUR62025688 Chenopodium quinoa HOM05D000370 ORTHO05D006313 1.6e-11 73.9 133 38.3
EL10Ac7g18106 Beta vulgaris HOM05D000370 ORTHO05D006313 2.1e-11 73.6 119 41.2
BcaB06g25494 Brassica carinata HOM05D000370 ORTHO05D006313 2.1e-11 73.6 120 40.0
C08p17540 Brassica napus HOM05D000370 ORTHO05D006313 2.8e-11 73.2 139 36.7
BolC8t49380H Brassica oleracea HOM05D000370 ORTHO05D006313 2.8e-11 73.2 139 36.7
Carub.0003s1234 Capsella rubella HOM05D000370 ORTHO05D006313 2.8e-11 73.2 130 40.0
Gohir.D03G111800 Gossypium hirsutum HOM05D013611 ORTHO05D011368 2.8e-11 73.2 62 66.1
Gorai.009G416800 Gossypium raimondii HOM05D013611 ORTHO05D011368 2.8e-11 73.2 118 46.6
Aa31LG7G1210 Aethionema arabicum HOM05D000370 ORTHO05D006313 3.6e-11 72.8 104 45.2
Os06g0704100 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 3.6e-11 72.8 92 47.8
AL1G28920 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 6.2e-11 72.0 87 47.1
AT3G13000 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 6.2e-11 72.0 98 44.9
Carub.0001s1649 Capsella rubella HOM05D000370 ORTHO05D006313 8.1e-11 71.6 122 36.9
Hund18552 Selenicereus undatus HOM05D000370 ORTHO05D006313 1.8e-10 70.5 120 42.5
Aqoxy7G02562 Aquilegia oxysepala HOM05D000370 ORTHO05D006313 2.4e-10 70.1 94 43.6
ClCG05G010450 Citrullus lanatus HOM05D000370 ORTHO05D006313 3.1e-10 69.7 84 51.2
TWI18G0896 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 4.0e-10 69.3 109 43.1
CDE04G3500 Ceratophyllum demersum HOM05D000370 ORTHO05D006313 5.2e-10 68.9 96 42.7
CSS0030510 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 2.0e-09 67.0 89 44.9
Gohir.D06G087000 Gossypium hirsutum HOM05D013611 ORTHO05D011368 3.4e-09 66.2 100 46.0
ATR0006G027 Amborella trichopoda HOM05D011012 ORTHO05D011368 4.4e-09 65.9 80 48.8
Thhalv10026856m.g Eutrema salsugineum HOM05D011012 ORTHO05D011368 1.3e-08 64.3 71 52.1
Zm00001eb227220 Zea mays HOM05D000370 ORTHO05D006313 1.3e-08 64.3 86 44.2
HPP92_010810 Vanilla planifolia HOM05D000370 ORTHO05D006313 2.2e-08 63.5 114 38.6
Gohir.D01G091100 Gossypium hirsutum HOM05D013611 ORTHO05D011368 8.4e-08 61.6 116 41.4
Pp3c13_8290 Physcomitrium patens HOM05D000370 ORTHO05D006313 2.4e-07 60.1 95 41.1
CARHR151380 Cardamine hirsuta HOM05D000370 ORTHO05D011368 3.2e-07 59.7 79 46.8
COL.COLO4_26817 Corchorus olitorius HOM05D000370 ORTHO05D006313 4.2e-07 59.3 58 58.6
Haze_16167 Corylus avellana HOM05D000370 ORTHO05D006313 4.2e-07 59.3 121 38.8
Pp3c3_3580 Physcomitrium patens HOM05D000370 ORTHO05D006313 5.4e-07 58.9 91 37.4
THA.LOC104812341 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 9.3e-07 58.2 87 39.1
Rhsim08G0252100 Rhododendron simsii HOM05D000370 ORTHO05D006313 2.7e-06 56.6 74 41.9
BcaC05g29217 Brassica carinata HOM05D000370 ORTHO05D006313 4.6e-06 55.8 65 46.2


User provided reference genes

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