Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 4.7e-147 524.6 287 100.0
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 5.1e-117 424.9 288 83.7
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 2.6e-113 412.5 288 81.9
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 3.2e-111 405.6 290 83.1
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 4.6e-110 401.7 287 79.4
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 4.6e-110 401.7 287 79.4
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 3.9e-109 398.7 296 78.4
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 8.6e-109 397.5 290 80.0
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.6e-107 392.1 286 76.9
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 2.4e-106 389.4 285 77.5
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.4e-106 389.4 289 81.7
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.7e-104 383.3 285 76.8
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 2.7e-102 375.9 281 80.4
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 5.1e-101 371.7 287 76.3
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 4.9e-96 355.1 285 71.9
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 2.1e-86 323.2 280 67.9
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 1.1e-79 300.8 217 79.3
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.1e-74 284.3 292 60.6
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 3.8e-72 275.8 205 79.5
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 2.7e-70 269.6 192 82.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 5.0e-32 142.5 293 39.9
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 4.7e-30 136.0 300 33.3
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.4e-29 134.4 301 34.9
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.8e-29 134.0 297 34.3
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.3e-29 133.7 298 35.6
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.2e-28 131.3 307 36.2
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.7e-27 127.5 303 33.7
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.1e-26 123.2 300 34.3
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.0e-26 122.1 286 32.2
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.2e-25 121.3 294 32.7
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.0e-25 120.6 303 35.0
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 3.5e-25 119.8 301 35.2
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 4.5e-25 119.4 293 35.2
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 4.5e-25 119.4 300 33.3
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 3.8e-24 116.3 304 33.9
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.8e-24 116.3 298 32.6
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 6.6e-24 115.5 298 34.6
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 6.6e-24 115.5 304 31.6
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.6e-24 115.2 293 35.2
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.5e-23 114.4 296 34.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.9e-23 114.0 287 34.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.2e-23 112.8 285 33.3
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 4.2e-23 112.8 296 33.4
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 7.2e-23 112.1 296 32.8
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.2e-22 111.3 288 34.4
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.6e-22 110.9 292 32.9
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 4.7e-22 109.4 299 29.8
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.0e-21 108.2 285 31.9
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.4e-21 107.8 274 35.4
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 2.3e-21 107.1 306 32.7
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 2.3e-21 107.1 298 32.9
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 5.2e-21 105.9 302 31.8
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 6.8e-21 105.5 299 33.1
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.4e-20 102.8 309 32.7
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 4.4e-20 102.8 280 30.7
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 5.7e-20 102.4 296 32.8
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 9.8e-20 101.7 287 32.4
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 1.3e-19 101.3 281 29.9
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 2.2e-19 100.5 334 30.5
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.2e-19 100.5 287 32.8
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.2e-19 100.5 305 30.8
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 3.7e-19 99.8 309 30.1
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 1.4e-18 97.8 303 29.7
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 1.8e-18 97.4 291 30.2
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 2.4e-18 97.1 277 32.9
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 2.4e-18 97.1 309 30.7
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 3.2e-18 96.7 291 32.0
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.1e-18 96.3 293 30.7
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 5.4e-18 95.9 290 29.7
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 5.4e-18 95.9 281 29.2
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 5.4e-18 95.9 281 29.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 9.2e-18 95.1 287 33.1
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 9.2e-18 95.1 284 30.6
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.2e-17 94.7 294 32.0
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.0e-17 94.0 292 31.2
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.0e-17 94.0 284 31.3
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 2.7e-17 93.6 287 31.7
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 2.7e-17 93.6 283 28.6
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.5e-17 92.8 286 31.5
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 4.5e-17 92.8 281 29.5
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 5.9e-17 92.4 294 32.3
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.0e-16 91.7 297 31.3
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.3e-16 91.3 296 32.1
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 3.9e-16 89.7 295 31.5
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 5.0e-16 89.4 292 30.1
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 5.0e-16 89.4 278 28.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 8.6e-16 88.6 165 38.8
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.9e-15 87.4 287 28.6
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.6e-14 84.3 285 30.2
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.7e-14 82.8 297 28.6
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 6.1e-14 82.4 276 30.4
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 8.0e-14 82.0 282 29.4
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.0e-13 81.6 281 28.1
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.0e-13 81.6 295 28.8
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.4e-13 81.3 322 29.5
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 2.3e-13 80.5 311 28.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 5.2e-13 79.3 286 29.4
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 8.9e-13 78.6 297 29.6
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 8.9e-13 78.6 286 28.0
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.2e-12 78.2 230 29.6
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 1.2e-12 78.2 353 28.0
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 1.5e-12 77.8 268 31.7
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.5e-12 77.8 357 28.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.0e-12 77.4 284 29.2
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 2.6e-12 77.0 278 30.2
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 3.4e-12 76.6 275 30.5
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 4.4e-12 76.3 135 37.8
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.8e-12 75.9 295 28.1
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 7.5e-12 75.5 291 30.2
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 7.5e-12 75.5 302 28.5
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 7.5e-12 75.5 287 30.3
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 9.8e-12 75.1 275 30.2
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.3e-11 74.7 275 30.2
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-11 74.3 275 30.2
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.7e-11 74.3 285 29.8
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 8.3e-11 72.0 290 26.6
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 8.3e-11 72.0 298 28.2
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.1e-10 71.6 274 30.3
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-10 71.2 280 28.9
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 1.9e-10 70.9 279 30.1
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.4e-10 70.5 288 29.9
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 4.1e-10 69.7 300 29.7
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 7.0e-10 68.9 283 30.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 7.0e-10 68.9 181 33.7
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 9.2e-10 68.6 308 29.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 1.2e-09 68.2 298 28.2
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 1.6e-09 67.8 298 28.9
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.0e-09 67.4 311 27.7
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 2.0e-09 67.4 301 28.9
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.7e-09 67.0 185 30.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.5e-09 66.6 277 30.0
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 4.6e-09 66.2 128 35.2
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.6e-09 66.2 280 28.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 6.0e-09 65.9 313 28.8
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 7.8e-09 65.5 303 29.4
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.0e-08 65.1 279 28.7
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.7e-08 64.3 311 28.9
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.7e-08 64.3 279 28.3
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.7e-08 64.3 280 28.9
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 2.3e-08 63.9 293 28.3
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.3e-08 63.9 267 28.8
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 3.0e-08 63.5 277 27.4
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 3.0e-08 63.5 145 35.2
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.9e-08 63.2 280 26.4
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 6.6e-08 62.4 256 28.5
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 8.6e-08 62.0 130 35.4
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 1.9e-07 60.8 173 32.4
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.5e-07 60.5 277 26.7
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 3.3e-07 60.1 289 28.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.3e-07 60.1 308 28.2
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 5.6e-07 59.3 312 26.0
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 1.2e-06 58.2 147 29.3
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.6e-06 57.8 292 27.7
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 2.1e-06 57.4 298 26.8
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.1e-06 57.4 293 25.3
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 2.1e-06 57.4 239 30.1
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.1e-06 57.4 184 32.1
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 3.6e-06 56.6 268 27.2


User provided reference genes

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