Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.2e-107 393.3 206 100.0
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.5e-102 375.6 206 94.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-100 370.2 206 92.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 5.8e-99 364.4 210 91.0
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.2e-98 362.5 207 92.8
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 9.3e-97 357.1 209 89.5
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.7e-96 355.5 207 88.9
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.8e-95 352.8 206 87.9
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 5.3e-92 341.3 206 83.5
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.8e-90 335.1 204 81.9
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.9e-89 332.8 204 81.4
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.4e-89 332.4 204 81.4
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-88 330.1 204 81.4
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-88 330.1 204 80.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.1e-88 329.3 202 80.7
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.1e-88 329.3 204 80.4
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 7.9e-88 327.4 204 80.4
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 3.0e-87 325.5 174 94.8
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.1e-86 323.6 210 78.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.5e-86 323.2 204 79.4
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.5e-86 322.4 210 77.6
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.3e-86 322.0 207 79.7
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.8e-85 318.2 205 80.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.2e-83 313.5 174 91.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.9e-74 282.3 205 70.2
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 4.6e-72 275.0 207 68.1
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 4.6e-72 275.0 206 67.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.8e-71 273.1 187 73.8
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.8e-71 273.1 207 67.1
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 3.9e-71 271.9 206 66.5
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.1e-71 271.6 206 65.5
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.5e-70 270.0 202 68.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.9e-70 269.6 202 68.8
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.9e-70 269.6 207 67.1
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.9e-70 269.6 202 67.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.5e-70 269.2 202 69.8
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 4.3e-70 268.5 202 68.3
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 4.3e-70 268.5 206 68.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 5.7e-70 268.1 206 67.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 5.7e-70 268.1 187 72.7
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 9.7e-70 267.3 193 71.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.6e-69 266.5 200 67.5
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.2e-69 266.2 204 67.6
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 6.3e-69 264.6 207 65.7
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.3e-69 264.6 207 64.7
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 8.2e-69 264.2 183 69.9
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.1e-68 263.8 204 67.6
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.1e-68 263.8 201 66.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.4e-68 263.5 198 67.2
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.4e-68 263.5 202 66.8
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.4e-68 263.5 207 64.7
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 2.4e-68 262.7 207 64.7
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.4e-68 262.7 200 67.0
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.4e-68 262.7 195 68.2
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.3e-68 261.5 203 64.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 5.3e-68 261.5 200 67.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 5.3e-68 261.5 209 64.6
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.3e-68 261.5 205 67.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 9.1e-68 260.8 205 67.3
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 9.1e-68 260.8 205 67.3
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.5e-67 260.0 200 65.5
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.0e-67 259.6 178 71.9
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 2.0e-67 259.6 201 65.2
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.6e-67 259.2 205 65.9
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.6e-67 259.2 201 65.2
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.4e-67 258.8 195 67.7
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 4.5e-67 258.5 201 66.7
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.9e-67 258.1 197 65.5
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.0e-66 257.3 191 67.5
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.0e-66 257.3 206 64.6
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-66 256.9 195 66.7
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.2e-66 256.1 204 67.2
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.2e-66 256.1 193 68.4
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 2.9e-66 255.8 206 64.1
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.9e-66 255.8 205 63.4
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.8e-66 255.4 223 62.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 5.0e-66 255.0 210 62.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 6.5e-66 254.6 203 64.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 6.5e-66 254.6 204 65.2
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.2e-65 251.9 197 62.4
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 5.5e-65 251.5 174 70.7
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 5.5e-65 251.5 221 62.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 7.2e-65 251.1 180 66.7
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 9.4e-65 250.8 207 63.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 7.9e-64 247.7 197 63.5
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.0e-63 247.3 202 63.4
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.0e-63 247.3 206 62.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.0e-63 247.3 198 63.6
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.1e-62 243.8 154 74.7
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.1e-62 243.8 194 61.3
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 3.3e-62 242.3 189 66.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.4e-62 241.9 204 61.3
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.4e-62 241.9 204 61.3
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.7e-62 241.5 206 62.6
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 7.4e-62 241.1 194 61.3
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.3e-61 240.4 194 63.4
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.7e-61 240.0 149 76.5
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.2e-61 239.6 195 64.6
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.8e-61 239.2 206 62.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 3.7e-61 238.8 195 65.1
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 3.7e-61 238.8 209 60.3
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 4.8e-61 238.4 188 66.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 4.8e-61 238.4 191 63.4
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 4.8e-61 238.4 206 61.7
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.2e-61 237.7 206 62.1
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.8e-60 236.5 173 67.6
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.8e-60 236.5 196 62.2
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.8e-60 236.5 206 61.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.4e-60 236.1 191 64.9
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 3.1e-60 235.7 201 61.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 4.1e-60 235.3 196 60.7
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 5.3e-60 235.0 194 62.9
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.3e-58 230.3 200 59.5
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.9e-58 229.2 205 60.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.0e-58 228.4 291 47.8
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.2e-56 223.8 163 66.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.6e-56 222.2 150 74.0
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 7.9e-56 221.1 191 58.6
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.8e-55 219.9 200 58.5
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.9e-55 218.8 191 60.2
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.3e-54 215.7 203 59.6
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.6e-51 206.1 169 62.1
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.6e-51 206.1 170 61.2
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 7.7e-51 204.5 123 80.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 8.5e-50 201.1 124 79.8
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 4.7e-48 195.3 166 60.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.7e-47 191.4 124 75.0
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-45 186.8 151 62.3
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.4e-44 183.7 186 54.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.1e-44 182.6 198 51.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.7e-43 177.9 164 58.5
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.9e-41 173.3 186 52.2
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 4.7e-40 168.7 113 71.7
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 6.1e-40 168.3 112 76.8
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 6.3e-37 158.3 103 76.7
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.1e-36 157.5 103 74.8
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-36 157.5 150 54.0
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.4e-36 156.4 191 44.5
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 3.8e-34 149.1 158 49.4
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.2e-32 144.1 86 76.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.8e-32 142.9 173 45.7
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 5.2e-31 138.7 70 94.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.5e-30 137.1 173 43.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 2.0e-30 136.7 70 92.9
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 5.0e-26 122.1 91 67.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 8.6e-26 121.3 99 61.6
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 5.6e-17 92.0 208 36.1
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.2e-15 85.5 211 34.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.2e-14 84.3 52 69.2
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 3.4e-14 82.8 183 32.8
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 7.5e-14 81.6 52 69.2
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 3.2e-12 76.3 75 54.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.6e-11 73.9 53 71.7
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 7.8e-11 71.6 62 61.3
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.3e-07 60.1 40 75.0


User provided reference genes

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