Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 9.3e-50 199.9 101 100.0
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.3e-48 196.1 101 98.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 3.0e-48 194.9 101 97.0
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 3.0e-48 194.9 101 97.0
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 3.0e-48 194.9 101 97.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 6.7e-48 193.7 101 96.0
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 6.7e-48 193.7 101 96.0
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 6.7e-48 193.7 101 96.0
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 6.7e-48 193.7 101 96.0
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 8.7e-48 193.4 101 96.0
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 4.3e-47 191.0 101 93.1
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.6e-46 189.1 101 93.1
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.1e-46 188.7 101 93.1
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 2.8e-46 188.3 101 94.1
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 6.2e-46 187.2 101 93.1
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 1.8e-45 185.7 101 93.1
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 3.4e-44 181.4 101 89.1
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 3.8e-43 177.9 93 95.7
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 8.4e-43 176.8 101 91.1
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 9.6e-39 163.3 99 81.8
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.7e-35 152.5 101 76.2
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.1e-34 149.8 102 78.4
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.9e-34 149.1 101 74.3
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 3.5e-33 144.8 98 73.5
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 4.6e-33 144.4 99 73.7
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 7.9e-33 143.7 101 67.3
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.8e-32 142.5 101 70.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.0e-32 141.7 101 71.3
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 6.7e-32 140.6 98 69.4
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 8.7e-32 140.2 97 71.1
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.5e-31 139.4 102 70.6
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.5e-31 139.4 101 68.3
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.9e-31 139.0 101 70.3
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 1.9e-31 139.0 100 68.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.5e-31 138.7 100 69.0
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 2.5e-31 138.7 100 71.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 3.3e-31 138.3 101 67.3
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 4.3e-31 137.9 101 66.3
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 4.3e-31 137.9 101 66.3
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.3e-31 137.9 101 68.3
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 4.3e-31 137.9 101 69.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 4.3e-31 137.9 99 68.7
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.7e-31 137.5 99 71.7
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 9.7e-31 136.7 76 89.5
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 66.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 67.3
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.2e-30 135.6 102 68.6
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 6.3e-30 134.0 100 65.0
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 6.3e-30 134.0 101 71.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 6.3e-30 134.0 101 71.3
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 6.3e-30 134.0 102 67.6
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.1e-29 133.3 101 68.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.4e-29 132.9 99 68.7
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.8e-29 132.5 99 69.7
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 4.1e-29 131.3 96 67.7
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.1e-29 131.3 91 75.8
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 6.9e-29 130.6 104 62.5
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 6.9e-29 130.6 97 64.9
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.2e-28 129.8 102 65.7
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.2e-28 129.8 100 64.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.4e-28 128.3 101 66.3
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.4e-28 128.3 101 65.3
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 3.4e-28 128.3 91 72.5
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 5.9e-28 127.5 101 64.4
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 5.9e-28 127.5 101 64.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 7.7e-28 127.1 99 61.6
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.7e-28 127.1 100 60.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 1.0e-27 126.7 94 64.9
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 1.3e-27 126.3 96 64.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.7e-27 125.9 101 63.4
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.7e-27 125.9 101 62.4
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.9e-27 125.2 101 60.4
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.8e-27 124.8 99 64.6
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 5.0e-27 124.4 102 61.8
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 5.0e-27 124.4 101 62.4
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 6.5e-27 124.0 98 64.3
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 8.5e-27 123.6 101 62.4
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 8.5e-27 123.6 98 64.3
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 8.5e-27 123.6 100 63.0
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.9e-26 122.5 89 69.7
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.5e-26 122.1 103 64.1
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 7.9e-25 117.1 91 65.9
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 5.1e-24 114.4 94 60.6
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.7e-24 114.0 99 61.6
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 6.7e-24 114.0 94 63.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.3e-23 111.7 100 60.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.2e-22 109.0 89 64.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.7e-22 108.2 99 59.6
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.8e-21 105.9 87 62.1
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 5.3e-21 104.4 101 57.4
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.0e-20 102.4 87 60.9
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.0e-19 100.1 76 61.8
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 3.8e-19 98.2 86 59.3
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 4.2e-18 94.7 77 61.0
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.6e-17 92.8 94 53.2
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.1e-17 92.4 96 56.2
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 3.6e-17 91.7 94 54.3
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.1e-17 90.9 101 51.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.8e-16 89.4 85 56.5
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 8.8e-16 87.0 83 57.8
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.1e-15 86.7 83 56.6
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.5e-15 86.3 75 58.7
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.3e-15 85.1 80 55.0
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.3e-15 85.1 80 55.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.4e-13 79.7 78 51.3
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.2e-12 76.6 75 52.0
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.0e-12 75.9 87 50.6
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.0e-11 73.6 75 53.3
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.3e-11 73.2 75 52.0
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.3e-11 73.2 89 49.4
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.8e-11 71.6 79 49.4
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 5.0e-11 71.2 80 47.5
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.1e-10 70.1 72 51.4
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.5e-10 69.7 70 52.9
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.5e-10 69.7 86 48.8
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 2.5e-10 68.9 62 56.5
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.2e-10 68.6 70 51.4
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.2e-10 68.6 70 51.4
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 5.5e-10 67.8 98 44.9
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 7.2e-10 67.4 62 56.5
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 7.2e-10 67.4 79 50.6
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 7.2e-10 67.4 79 50.6
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 7.2e-10 67.4 69 53.6
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 9.4e-10 67.0 81 46.9
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.2e-09 66.6 60 58.3
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.6e-09 66.2 77 49.4
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.6e-09 66.2 62 51.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.6e-09 66.2 62 56.5
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.6e-09 66.2 84 46.4
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.6e-09 66.2 70 50.0
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 2.1e-09 65.9 49 63.3
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.1e-09 65.9 69 49.3
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 3.6e-09 65.1 69 49.3
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 4.7e-09 64.7 72 48.6
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.1e-09 64.3 59 49.2
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 8.0e-09 63.9 62 54.8
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 8.0e-09 63.9 62 54.8
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.0e-08 63.5 60 56.7
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.0e-08 63.5 59 49.2
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.4e-08 63.2 97 42.3
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-08 63.2 63 55.6
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.8e-08 62.8 84 48.8
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.8e-08 62.8 60 55.0
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.3e-08 62.4 75 48.0
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 5.2e-08 61.2 69 49.3
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 5.2e-08 61.2 62 50.0
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 6.7e-08 60.8 62 50.0
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 8.8e-08 60.5 79 43.0
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 8.8e-08 60.5 62 53.2
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.1e-07 60.1 47 61.7
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 2.0e-07 59.3 62 51.6
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 2.0e-07 59.3 63 50.8
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.6e-07 58.9 63 52.4
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.6e-07 58.9 86 43.0
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.6e-07 58.9 86 43.0
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.6e-07 58.9 86 43.0
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 9.7e-07 57.0 90 41.1
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.3e-06 56.6 62 50.0
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.8e-06 55.5 63 54.0
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.8e-06 55.5 63 54.0
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.8e-06 55.5 63 54.0
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.8e-06 55.5 63 54.0
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.8e-06 55.5 63 54.0
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 3.7e-06 55.1 64 48.4
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 4.8e-06 54.7 83 41.0
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.8e-06 54.7 81 42.0


User provided reference genes

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