Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g29600 Schrenkiella parvula HOM05D005497 ORTHO05D006733 9.6e-195 683.3 351 100.0
Thhalv10025612m.g Eutrema salsugineum HOM05D005497 ORTHO05D006733 3.0e-148 528.9 353 80.5
CARHR239720 Cardamine hirsuta HOM05D005497 ORTHO05D006733 7.8e-136 487.6 353 76.2
AL7G20200 Arabidopsis lyrata HOM05D005497 ORTHO05D006733 1.0e-135 487.3 352 77.0
Carub.0007s0875 Capsella rubella HOM05D005497 ORTHO05D006733 4.9e-130 468.4 351 74.9
AT4G31805 Arabidopsis thaliana HOM05D005497 ORTHO05D006733 4.6e-128 461.8 364 72.0
Aa31LG2G18440 Aethionema arabicum HOM05D005497 ORTHO05D006733 9.9e-115 417.5 353 68.8
A03p61000 Brassica napus HOM05D005497 ORTHO05D006733 2.2e-114 416.4 338 70.4
BraA03t15141Z Brassica rapa HOM05D005497 ORTHO05D006733 2.2e-114 416.4 338 70.4
BcaNung01497 Brassica carinata HOM05D005497 ORTHO05D006733 7.8e-112 407.9 335 70.4
C07p58900 Brassica napus HOM05D005497 ORTHO05D006733 7.8e-112 407.9 335 70.4
BolC7t46337H Brassica oleracea HOM05D005497 ORTHO05D006733 7.8e-112 407.9 335 70.4
THA.LOC104803861 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 5.1e-95 352.1 371 57.4
Potri.018G019400 Populus trichocarpa HOM05D005497 ORTHO05D006733 1.5e-33 147.9 315 34.6
Sabra18G0021900 Salix brachista HOM05D005497 ORTHO05D006733 1.6e-32 144.4 311 34.7
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 1.2e-30 138.3 318 34.6
Thecc.09G016200 Theobroma cacao HOM05D005497 ORTHO05D006733 4.4e-30 136.3 319 37.0
Actinidia10518 Actinidia chinensis HOM05D005497 ORTHO05D006733 3.7e-29 133.3 331 32.0
MELO3C016964.2 Cucumis melo HOM05D005497 ORTHO05D006733 2.4e-28 130.6 336 33.3
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 5.4e-28 129.4 335 31.9
Gohir.D06G103600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 4.5e-27 126.3 316 34.2
Gorai.010G118600 Gossypium raimondii HOM05D005497 ORTHO05D006733 5.9e-27 125.9 317 34.4
Gohir.A06G101600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 2.9e-26 123.6 317 33.8
TWI32G0158 Tripterygium wilfordii HOM05D005497 ORTHO05D006733 5.0e-26 122.9 328 32.0
Sed0001000 Sechium edule HOM05D005497 ORTHO05D006733 6.6e-26 122.5 323 32.8
THA.LOC104799021 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 8.6e-26 122.1 326 31.6
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.1e-25 121.7 332 31.6
Manes.16G129200 Manihot esculenta HOM05D005497 ORTHO05D006733 1.5e-25 121.3 323 33.4
COL.COLO4_18946 Corchorus olitorius HOM05D001770 ORTHO05D001822 2.5e-25 120.6 327 34.9
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 5.6e-25 119.4 326 33.1
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 7.2e-25 119.0 335 31.0
RcHm_v2.0_Chr6g0299451 Rosa chinensis HOM05D005497 ORTHO05D006733 6.1e-24 115.9 321 31.8
arahy.Tifrunner.gnm1.ann1.F9G1S6 Arachis hypogaea HOM05D005497 ORTHO05D006733 1.4e-23 114.8 318 30.2
Gohir.A05G059400 Gossypium hirsutum HOM05D005497 ORTHO05D006733 1.4e-23 114.8 308 33.4
vmacro11245 Vaccinium macrocarpon HOM05D005497 ORTHO05D006733 1.4e-23 114.8 334 32.0
arahy.Tifrunner.gnm1.ann1.FJBE5X Arachis hypogaea HOM05D005497 ORTHO05D006733 1.8e-23 114.4 318 30.2
Carub.0006s0938 Capsella rubella HOM05D005497 ORTHO05D006733 2.3e-23 114.0 353 28.3
Glyma.04G061200 Glycine max HOM05D005497 ORTHO05D006733 2.3e-23 114.0 321 30.2
VMungo1309G2451 Vigna mungo HOM05D005497 ORTHO05D006733 2.3e-23 114.0 319 34.2
Duzib168G1440 Durio zibethinus HOM05D005497 ORTHO05D006733 4.0e-23 113.2 309 32.7
PGR044G0919 Punica granatum HOM05D005497 ORTHO05D006733 6.8e-23 112.5 326 31.0
Atru.chr7.2544 Acer truncatum HOM05D005497 ORTHO05D006733 1.2e-22 111.7 311 32.5
AUR62031606 Chenopodium quinoa HOM05D005497 ORTHO05D006733 1.5e-22 111.3 343 32.4
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 1.5e-22 111.3 315 33.3
Ciclev10008815m.g Citrus clementina HOM05D005497 ORTHO05D006733 2.0e-22 110.9 307 34.2
Hund19563 Selenicereus undatus HOM05D005497 ORTHO05D006733 2.0e-22 110.9 324 30.6
AT5G10890 Arabidopsis thaliana HOM05D005497 ORTHO05D006733 2.6e-22 110.5 335 29.9
Rhsim02G0213400 Rhododendron simsii HOM05D005497 ORTHO05D006733 4.4e-22 109.8 346 32.4
Glyma.06G061800 Glycine max HOM05D005497 ORTHO05D006733 5.7e-22 109.4 314 31.2
Gorai.009G062600 Gossypium raimondii HOM05D005497 ORTHO05D006733 7.5e-22 109.0 314 31.8
AL6G21450 Arabidopsis lyrata HOM05D005497 ORTHO05D006733 1.3e-21 108.2 355 29.3
Gohir.D05G061500 Gossypium hirsutum HOM05D005497 ORTHO05D006733 1.3e-21 108.2 314 31.8
AUR62012481 Chenopodium quinoa HOM05D005497 ORTHO05D006733 2.2e-21 107.5 338 32.5
Prupe.1G393300 Prunus persica HOM05D005497 ORTHO05D006733 2.2e-21 107.5 324 30.6
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 2.9e-21 107.1 306 33.0
MD15G1039900 Malus domestica HOM05D005497 ORTHO05D006733 6.4e-21 105.9 328 32.0
A02p00730 Brassica napus HOM05D005497 ORTHO05D006733 1.1e-20 105.1 331 27.5
BraA02t05058Z Brassica rapa HOM05D005497 ORTHO05D006733 1.1e-20 105.1 331 27.5
TAR626G1486 Trochodendron aralioides HOM05D005497 ORTHO05D006733 2.4e-20 104.0 311 30.2
MSTRG.25841 Avicennia marina HOM05D005497 ORTHO05D006733 3.2e-20 103.6 331 29.9
BolC2t06432H Brassica oleracea HOM05D005497 ORTHO05D006733 3.2e-20 103.6 328 26.5
Cpa.g.sc127.31 Carica papaya HOM05D005497 ORTHO05D006733 5.4e-20 102.8 367 30.8
FAN27G2527 Fragaria x ananassa HOM05D005497 ORTHO05D006733 9.2e-20 102.1 302 33.1
Sc23g0006400 Simmondsia chinensis HOM05D005497 ORTHO05D006733 9.2e-20 102.1 318 31.8
Actinidia23103 Actinidia chinensis HOM05D005497 ORTHO05D006733 1.2e-19 101.7 338 31.7
Phvul.009G087300 Phaseolus vulgaris HOM05D005497 ORTHO05D006733 2.7e-19 100.5 312 29.8
BcaB03g12720 Brassica carinata HOM05D005497 ORTHO05D006733 3.5e-19 100.1 60 88.3
BcaC03g13338 Brassica carinata HOM05D001770 ORTHO05D006733 5.9e-19 99.4 323 26.0
BcaNung01901 Brassica carinata HOM05D005497 ORTHO05D006733 7.8e-19 99.0 336 28.0
C02p04730 Brassica napus HOM05D005497 ORTHO05D006733 7.8e-19 99.0 330 26.1
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 7.8e-19 99.0 363 29.5
EL10Ac2g04114 Beta vulgaris HOM05D005497 ORTHO05D006733 1.0e-18 98.6 317 30.9
Sopen02g018670 Solanum pennellii HOM05D005497 ORTHO05D006733 1.0e-18 98.6 331 27.8
QL02p018953 Quercus lobata HOM05D005497 ORTHO05D006733 1.7e-18 97.8 346 29.5
PGSC0003DMG400021201 Solanum tuberosum HOM05D005497 ORTHO05D006733 6.6e-18 95.9 333 28.2
Thhalv10014215m.g Eutrema salsugineum HOM05D005497 ORTHO05D006733 8.6e-18 95.5 281 29.9
Medtr3g106030 Medicago truncatula HOM05D005497 ORTHO05D006733 1.5e-17 94.7 312 28.5
CARHR202400 Cardamine hirsuta HOM05D005497 ORTHO05D006733 1.9e-17 94.4 316 30.1
MD08G1057500 Malus domestica HOM05D005497 ORTHO05D006733 1.9e-17 94.4 355 30.7
Nitab4.5_0002964g0010 Nicotiana tabacum HOM05D005497 ORTHO05D006733 1.9e-17 94.4 325 28.9
Aa31LG3G16230 Aethionema arabicum HOM05D005497 ORTHO05D006733 3.3e-17 93.6 340 25.3
Nn8g39874 Nelumbo nucifera HOM05D005497 ORTHO05D006733 7.3e-17 92.4 315 31.7
SalBow4G2467 Salvia bowleyana HOM05D005497 ORTHO05D006733 9.5e-17 92.0 322 28.3
CiPaw.07G229800 Carya illinoinensis HOM05D005497 ORTHO05D006733 1.2e-16 91.7 241 34.4
Nn8g39876 Nelumbo nucifera HOM05D005497 ORTHO05D006733 1.6e-16 91.3 231 32.9
Ca_15775_v3 Cicer arietinum L. HOM05D005497 ORTHO05D006733 3.6e-16 90.1 321 28.3
FAN05G5083 Fragaria x ananassa HOM05D005497 ORTHO05D006733 8.0e-16 89.0 222 36.0
Lj1g0009907 Lotus japonicus HOM05D005497 ORTHO05D006733 1.8e-15 87.8 322 29.2
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 5.2e-15 86.3 332 26.2
Nitab4.5_0001219g0100 Nicotiana tabacum HOM05D005497 ORTHO05D006733 1.2e-14 85.1 318 27.7
Sabra06G0206300 Salix brachista HOM05D005497 ORTHO05D006733 1.2e-14 85.1 294 29.9
Migut.A00338 Erythranthe guttata HOM05D005497 ORTHO05D006733 2.6e-14 84.0 337 26.7
Eucgr.F04316 Eucalyptus grandis HOM05D005497 ORTHO05D006733 2.6e-14 84.0 221 34.4
Aqoxy2G02176 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 3.4e-14 83.6 247 29.6
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 3.4e-14 83.6 252 31.0
Solyc02g069540.3 Solanum lycopersicum HOM05D005497 ORTHO05D006733 3.4e-14 83.6 235 29.8
Lalb_Chr08g0244421 Lupinus albus HOM05D005497 ORTHO05D006733 4.4e-14 83.2 283 27.9
Psat5g032840 Pisum sativum HOM05D005497 ORTHO05D006733 5.8e-14 82.8 310 27.4
Potri.006G263800 Populus trichocarpa HOM05D005497 ORTHO05D006733 5.8e-14 82.8 315 26.7
Eucgr.C02658 Eucalyptus grandis HOM05D005497 ORTHO05D006733 2.9e-13 80.5 228 32.0
ATR0739G202 Amborella trichopoda HOM05D005497 ORTHO05D006733 8.3e-13 79.0 259 30.5
Cfa013061 Carpinus fangiana HOM05D001770 ORTHO05D001822 8.3e-13 79.0 226 30.5
A10p26790 Brassica napus HOM05D000238 ORTHO05D001043 1.4e-12 78.2 87 44.8
Manes.16G128200 Manihot esculenta HOM05D005497 ORTHO05D006733 1.9e-12 77.8 290 31.0
HPP92_015875 Vanilla planifolia HOM05D005497 ORTHO05D004339 5.4e-12 76.3 312 28.8
Nn2g12349 Nelumbo nucifera HOM05D005497 ORTHO05D006733 9.2e-12 75.5 243 32.1
CsaV3_4G036590 Cucumis sativus L. HOM05D005497 ORTHO05D006733 3.5e-11 73.6 233 33.0
Hund30561 Selenicereus undatus HOM05D005497 ORTHO05D006733 4.6e-11 73.2 63 54.0
FAN19G2468 Fragaria x ananassa HOM05D005497 ORTHO05D006733 6.0e-11 72.8 195 35.4
FAN11G1326 Fragaria x ananassa HOM05D005497 ORTHO05D006733 7.8e-11 72.4 195 35.4
Hund30563 Selenicereus undatus HOM05D005497 ORTHO05D006733 1.0e-10 72.0 63 54.0
Aqoxy7G03424 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 2.3e-10 70.9 295 23.4
Os06g0648500 Oryza sativa ssp. japonica HOM05D005497 ORTHO05D006733 2.3e-10 70.9 250 28.4
Peaxi162Scf00195g00412 Petunia axillaris HOM05D005497 ORTHO05D006733 2.3e-10 70.9 224 29.0
C09p65930 Brassica napus HOM05D000238 ORTHO05D002998 3.0e-10 70.5 270 26.3
BolC9t59416H Brassica oleracea HOM05D005497 ORTHO05D006733 8.6e-10 68.9 316 23.4
FAN22G2245 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.1e-09 68.6 196 34.2
Zm00001eb374680 Zea mays HOM05D005497 ORTHO05D006733 1.9e-09 67.8 63 52.4
FAN20G1858 Fragaria x ananassa HOM05D005497 ORTHO05D006733 4.3e-09 66.6 55 56.4
FAN23G0278 Fragaria x ananassa HOM05D005497 ORTHO05D006733 4.3e-09 66.6 195 33.8
Os06g0184200 Oryza sativa ssp. japonica HOM05D005497 ORTHO05D006733 7.3e-09 65.9 63 52.4
Os02g0795200 Oryza sativa ssp. japonica HOM05D005497 ORTHO05D006733 9.5e-09 65.5 228 27.6
Manes.07G133004 Manihot esculenta HOM05D005497 ORTHO05D006733 1.2e-08 65.1 191 30.9
PGR044G0855 Punica granatum HOM05D005497 ORTHO05D006733 1.6e-08 64.7 118 37.3
Dinv40973 Davidia involucrata HOM05D005497 ORTHO05D006733 2.8e-08 63.9 237 29.1
FAN01G0816 Fragaria x ananassa HOM05D005497 ORTHO05D006733 3.6e-08 63.5 47 61.7
Cc08_g07940 Coffea canephora HOM05D005497 ORTHO05D006733 8.1e-08 62.4 221 29.0
CAN.G675.26 Capsicum annuum HOM05D005497 ORTHO05D006733 3.1e-07 60.5 241 25.7
TAR383G0546 Trochodendron aralioides HOM05D005497 ORTHO05D006733 4.4e-06 56.6 168 30.4


User provided reference genes

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