Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 5.2e-159 564.3 278 100.0
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 5.0e-154 547.7 278 96.4
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 3.2e-153 545.0 278 96.0
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 7.2e-153 543.9 278 95.7
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 9.4e-153 543.5 278 96.0
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 2.1e-152 542.3 278 95.3
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.1e-152 542.3 278 95.3
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 2.7e-152 542.0 273 96.3
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.8e-151 539.3 278 93.9
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.2e-150 536.6 278 93.9
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 1.5e-150 536.2 278 93.9
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 2.6e-150 535.4 278 93.2
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.4e-148 529.6 278 92.4
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.6e-134 482.3 272 84.6
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.8e-134 481.1 272 84.2
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 9.8e-134 480.3 272 84.2
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 9.8e-134 480.3 272 84.6
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 3.7e-133 478.4 272 84.2
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.1e-132 476.9 272 83.8
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.2e-131 473.4 277 81.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 3.5e-131 471.9 277 81.9
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.6e-131 471.5 277 81.9
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 6.0e-131 471.1 272 82.4
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 3.0e-130 468.8 277 81.9
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 6.6e-130 467.6 271 83.4
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 6.6e-130 467.6 277 80.5
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 6.6e-130 467.6 271 83.0
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 8.6e-130 467.2 271 83.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.1e-129 466.8 272 83.1
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.5e-129 466.5 275 80.7
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 1.5e-129 466.5 271 83.0
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 1.5e-129 466.5 271 83.0
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 2.5e-129 465.7 272 82.7
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 7.3e-129 464.2 272 81.2
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.2e-128 463.4 272 82.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 2.8e-128 462.2 277 79.8
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 4.7e-128 461.5 272 81.2
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.1e-127 460.3 277 79.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.1e-127 460.3 274 80.7
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.1e-127 460.3 274 80.7
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.4e-127 459.9 272 82.4
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.1e-127 458.8 272 81.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 3.1e-127 458.8 272 80.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 4.0e-127 458.4 271 81.5
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 5.2e-127 458.0 278 80.2
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 5.2e-127 458.0 272 80.5
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 5.2e-127 458.0 272 81.2
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 5.2e-127 458.0 275 79.6
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 8.9e-127 457.2 275 79.3
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.2e-126 456.8 271 81.2
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 1.2e-126 456.8 272 80.1
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.5e-126 456.4 275 79.3
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.0e-126 456.1 275 78.9
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 4.4e-126 454.9 277 79.8
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 7.5e-126 454.1 272 80.5
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 7.5e-126 454.1 278 79.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 9.8e-126 453.8 271 81.2
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 9.8e-126 453.8 272 80.1
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.7e-125 453.0 272 79.0
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.7e-125 453.0 275 79.6
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.7e-125 451.8 272 79.4
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 3.7e-125 451.8 276 78.6
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 4.9e-125 451.4 276 77.2
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 8.3e-125 450.7 277 77.6
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.4e-124 449.9 275 77.5
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 4.1e-124 448.4 275 77.8
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 4.1e-124 448.4 272 78.3
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 5.4e-124 448.0 277 78.3
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 5.4e-124 448.0 277 78.0
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 9.2e-124 447.2 271 78.6
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.7e-123 445.7 270 78.1
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 6.0e-123 444.5 275 77.8
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.0e-122 443.7 275 78.9
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.7e-122 443.0 275 77.8
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.8e-120 435.6 271 78.6
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.8e-120 435.6 271 78.6
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 3.6e-120 435.3 271 75.3
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 6.2e-120 434.5 271 76.4
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 8.1e-120 434.1 305 71.5
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.1e-119 433.7 271 77.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.8e-119 433.0 275 76.7
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 4.0e-119 431.8 271 76.0
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 8.9e-119 430.6 271 75.6
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 8.9e-119 430.6 305 69.8
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 8.9e-119 430.6 258 80.2
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.2e-118 430.3 303 71.0
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.6e-118 429.1 277 76.2
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 7.5e-118 427.6 263 77.2
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.7e-117 425.2 272 73.9
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.4e-116 423.3 271 73.8
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.9e-116 422.9 272 76.5
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.2e-115 420.2 277 75.1
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.6e-115 419.9 271 73.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 5.6e-113 411.4 289 71.3
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.3e-113 411.0 262 72.9
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 3.6e-112 408.7 274 70.1
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 6.2e-112 407.9 385 55.8
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 8.9e-111 404.1 272 69.1
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 2.6e-110 402.5 271 73.8
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.3e-109 400.2 272 68.8
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.9e-109 399.1 242 77.7
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.9e-108 396.4 272 68.4
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 9.2e-108 394.0 271 66.8
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-107 393.7 278 73.4
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 6.0e-107 391.3 278 74.8
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 2.3e-106 389.4 278 74.5
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 3.9e-106 388.7 242 76.9
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 9.6e-105 384.0 272 70.6
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.2e-104 383.6 246 74.0
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 7.6e-102 374.4 228 77.6
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 2.9e-101 372.5 278 70.1
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.2e-100 369.0 227 76.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.6e-99 366.7 272 65.4
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 7.3e-97 357.8 252 71.4
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 3.2e-92 342.4 278 66.5
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 9.3e-92 340.9 222 73.9
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 7.9e-91 337.8 198 80.8
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.0e-90 337.4 272 60.3
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 7.4e-89 331.3 272 57.7
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.0e-86 323.2 292 57.2
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 7.9e-83 311.2 179 80.4
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 5.1e-74 282.0 277 49.8
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.2e-72 276.6 168 78.0
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.2e-72 276.6 241 59.3
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 8.5e-69 264.6 153 79.7
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 7.2e-68 261.5 279 55.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 2.1e-67 260.0 160 81.2
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.8e-66 256.9 154 79.9
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.5e-62 243.8 165 72.7
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.6e-59 233.8 207 59.4
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.1e-52 211.1 277 45.5
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.2e-45 186.8 271 45.0
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 8.5e-45 184.9 265 47.2
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.1e-43 180.3 269 45.7
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.4e-42 177.6 128 68.0
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 3.1e-39 166.4 261 44.4
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.5e-38 162.9 185 53.0
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 2.5e-36 156.8 148 60.1
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.5e-33 147.5 100 72.0
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.1e-27 127.1 136 47.8
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 8.0e-27 125.2 67 80.6
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.8e-26 124.0 136 47.1
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 3.0e-26 123.2 98 62.2
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.4e-18 97.8 63 71.4
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.9e-16 90.1 73 58.9
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.0e-13 81.6 45 86.7
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.1e-12 78.2 92 46.7
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 2.6e-09 67.0 48 68.8


User provided reference genes

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