Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 6.5e-94 347.4 182 100.0
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 8.5e-86 320.5 184 92.9
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.1e-84 315.8 183 93.4
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 3.6e-84 315.1 182 91.8
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 8.0e-84 313.9 186 92.5
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-82 310.1 186 92.5
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.1e-80 303.5 182 90.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 1.7e-78 296.2 190 87.4
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.2e-78 295.8 186 86.6
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 5.5e-77 291.2 179 89.9
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.3e-73 280.0 183 85.8
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 4.1e-72 275.0 188 80.3
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.3e-70 270.0 176 84.1
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.2e-70 269.2 187 80.2
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 1.5e-69 266.5 186 79.6
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 4.2e-69 265.0 183 80.3
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 9.4e-69 263.8 183 79.8
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 4.7e-68 261.5 189 76.7
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 8.8e-67 257.3 186 80.1
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 8.8e-67 257.3 186 80.1
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.2e-66 256.9 186 80.1
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.2e-66 256.9 186 80.1
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 5.7e-66 254.6 185 79.5
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 7.5e-66 254.2 183 77.0
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.1e-61 240.4 208 67.8
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 2.8e-60 235.7 157 83.4
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.3e-59 232.6 194 69.6
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 1.3e-57 226.9 185 68.6
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.3e-57 226.9 163 77.9
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 1.7e-57 226.5 188 71.8
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 2.2e-57 226.1 173 74.6
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 3.7e-57 225.3 156 79.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.4e-56 223.4 147 81.0
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.8e-56 223.0 143 83.2
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 3.2e-56 222.2 179 71.5
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 4.1e-56 221.9 166 77.1
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 5.4e-56 221.5 180 71.1
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 5.4e-56 221.5 146 82.2
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 5.4e-56 221.5 146 82.2
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 5.4e-56 221.5 145 84.8
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 7.0e-56 221.1 151 77.5
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 9.2e-56 220.7 144 81.9
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.2e-55 220.3 153 75.2
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.6e-55 219.9 153 74.5
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.0e-55 219.5 148 81.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.0e-55 219.5 180 68.9
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.7e-55 219.2 140 83.6
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.7e-55 219.2 182 70.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 2.7e-55 219.2 145 77.9
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 2.7e-55 219.2 148 79.7
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.7e-55 219.2 148 80.4
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 3.5e-55 218.8 168 73.8
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 3.5e-55 218.8 151 80.1
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.5e-55 218.8 145 82.1
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 3.5e-55 218.8 144 81.9
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 3.5e-55 218.8 139 82.7
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 3.5e-55 218.8 145 82.8
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.6e-55 218.4 144 82.6
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 4.6e-55 218.4 141 81.6
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 5.9e-55 218.0 138 81.2
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 7.8e-55 217.6 163 74.2
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.8e-55 217.6 142 79.6
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.0e-54 217.2 145 80.0
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.3e-54 216.9 148 77.7
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.7e-54 216.5 166 72.3
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.3e-54 216.1 144 81.9
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 2.3e-54 216.1 144 81.9
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 3.0e-54 215.7 152 81.6
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.0e-54 215.7 138 81.9
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 3.0e-54 215.7 174 69.5
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 3.0e-54 215.7 149 79.9
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 3.0e-54 215.7 190 66.3
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 3.9e-54 215.3 174 71.3
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 3.9e-54 215.3 134 83.6
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 5.0e-54 214.9 141 80.1
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 6.6e-54 214.5 167 71.9
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 6.6e-54 214.5 175 71.4
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 6.6e-54 214.5 145 80.7
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.6e-54 214.5 159 74.2
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 8.6e-54 214.2 177 68.4
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.5e-53 213.4 150 79.3
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 1.5e-53 213.4 138 81.2
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 1.9e-53 213.0 145 77.2
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.5e-53 212.6 148 78.4
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.5e-53 212.6 148 78.4
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 2.5e-53 212.6 148 78.4
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 2.5e-53 212.6 189 67.2
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.5e-53 212.6 137 83.2
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 3.3e-53 212.2 138 81.2
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 3.3e-53 212.2 140 83.6
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 3.3e-53 212.2 137 81.8
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 3.3e-53 212.2 137 82.5
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 3.3e-53 212.2 162 71.0
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 4.3e-53 211.8 142 78.9
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 7.3e-53 211.1 140 80.7
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 7.3e-53 211.1 152 75.7
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.2e-52 210.3 138 80.4
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 1.6e-52 209.9 142 78.2
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.6e-52 209.9 140 80.7
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 1.6e-52 209.9 140 80.7
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.6e-52 209.9 140 80.7
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.1e-52 209.5 146 78.1
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 2.1e-52 209.5 179 70.4
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 2.8e-52 209.1 137 81.8
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 3.6e-52 208.8 148 73.6
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 4.7e-52 208.4 161 72.7
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 4.7e-52 208.4 169 72.8
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.2e-52 208.0 144 79.2
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.0e-51 207.2 184 65.2
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.4e-51 206.8 141 78.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 2.3e-51 206.1 176 68.8
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 2.3e-51 206.1 141 76.6
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 3.1e-51 205.7 152 76.3
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 6.8e-51 204.5 163 71.8
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 8.9e-51 204.1 184 69.0
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.2e-50 203.8 149 73.2
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.5e-50 203.4 143 76.2
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.0e-50 203.0 186 65.1
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.6e-50 202.6 115 91.3
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.4e-50 201.8 115 89.6
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.4e-50 201.8 115 89.6
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 5.8e-50 201.4 159 73.6
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 5.8e-50 201.4 139 80.6
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 4.9e-49 198.4 174 64.9
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 1.4e-48 196.8 113 89.4
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.9e-48 196.4 115 87.8
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 2.4e-48 196.1 147 72.1
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.4e-48 196.1 141 77.3
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 1.6e-47 193.4 112 88.4
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 2.7e-47 192.6 177 63.3
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 4.6e-47 191.8 113 85.8
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 7.8e-47 191.0 164 66.5
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 2.8e-44 182.6 136 66.9
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.1e-43 180.6 176 59.1
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.4e-43 180.3 180 60.0
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.2e-42 177.2 158 62.0
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 9.8e-42 174.1 111 81.1
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.7e-41 173.3 109 78.9
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.2e-41 172.9 166 59.0
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.1e-40 170.6 138 67.4
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.4e-40 170.2 136 69.9
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.1e-40 168.7 162 56.8
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.2e-40 167.5 137 68.6
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.2e-40 167.5 137 68.6
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 1.6e-39 166.8 129 72.1
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 6.0e-39 164.9 148 66.2
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 1.0e-38 164.1 157 63.1
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 7.3e-37 157.9 111 72.1
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 2.1e-36 156.4 118 69.5
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 3.6e-36 155.6 113 70.8
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 8.1e-36 154.5 148 63.5
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 7.6e-34 147.9 141 63.8
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.3e-33 147.1 139 66.9
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 1.1e-32 144.1 293 36.9
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 3.0e-30 136.0 109 63.3
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.2e-26 124.0 121 63.6
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 2.6e-26 122.9 101 72.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-25 120.2 96 74.0
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.1e-24 117.5 97 72.2
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 4.2e-24 115.5 131 50.4
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 7.1e-24 114.8 97 71.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 7.1e-24 114.8 97 71.1
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 9.3e-24 114.4 91 71.4
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 5.6e-21 105.1 77 75.3
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.3e-20 104.0 76 77.6
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 4.9e-17 92.0 86 59.3
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.9e-16 90.1 47 95.7
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 9.3e-16 87.8 49 89.8
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 2.8e-12 76.3 44 86.4
CARHR238500 Cardamine hirsuta HOM05D004106 ORTHO05D116395 8.4e-09 64.7 62 61.3
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 8.4e-09 64.7 38 84.2


User provided reference genes

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