Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 4.5e-92 341.3 174 100.0
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-88 329.7 174 94.8
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.3e-88 329.7 174 94.8
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.3e-88 329.7 174 94.8
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.3e-88 329.7 174 94.8
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 3.0e-88 328.6 174 94.8
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 3.0e-88 328.6 174 93.7
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 6.7e-88 327.4 174 94.3
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 1.3e-86 323.2 174 93.1
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.8e-85 319.3 174 92.5
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 5.3e-85 317.8 174 91.4
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 6.9e-85 317.4 173 91.3
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 5.8e-84 314.3 174 89.1
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 8.4e-83 310.5 174 88.5
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.1e-82 310.1 174 88.5
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 7.9e-81 303.9 166 90.4
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.3e-80 303.1 174 86.2
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 3.0e-80 302.0 166 89.8
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 3.0e-80 302.0 174 85.6
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 9.6e-79 297.0 174 84.5
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.8e-78 295.4 171 87.1
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 6.9e-77 290.8 174 83.3
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 5.8e-76 287.7 174 82.2
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 3.2e-74 282.0 174 78.7
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 1.6e-73 279.6 151 89.4
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 79.9
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 77.6
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 4.6e-73 278.1 174 77.6
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 79.3
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 77.0
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 7.9e-73 277.3 174 77.0
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 78.7
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 79.3
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 77.6
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 2.3e-72 275.8 174 75.9
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 3.0e-72 275.4 174 77.0
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 5.1e-72 274.6 174 77.6
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 5.1e-72 274.6 174 75.9
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 6.7e-72 274.2 174 77.0
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 76.4
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.5e-71 272.3 174 75.9
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 3.3e-71 271.9 174 74.7
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 75.3
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 5.7e-71 271.2 174 74.7
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 5.7e-71 271.2 174 74.7
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 5.7e-71 271.2 174 75.3
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 74.7
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 75.9
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 75.3
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 74.1
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 76.4
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 75.9
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.7
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.4e-69 266.5 175 74.3
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 74.7
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 73.6
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 74.1
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 72.4
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 1.5e-68 263.1 174 73.0
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 1.5e-68 263.1 174 72.4
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 74.7
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 2.6e-68 262.3 194 68.6
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 3.4e-68 261.9 174 75.3
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 71.3
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 71.8
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.6
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 72.4
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 74.1
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 73.0
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 72.4
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 73.0
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 9.3e-66 253.8 174 72.4
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 1.6e-65 253.1 175 71.4
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 71.3
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 70.7
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 69.0
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 69.0
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.8e-64 249.6 171 71.3
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 2.3e-64 249.2 198 65.2
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 5.1e-64 248.1 174 68.4
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 70.7
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 70.1
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 67.2
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 6.3e-62 241.1 171 68.4
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 69.0
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 8.2e-62 240.7 174 68.4
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 70.1
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 1.8e-61 239.6 175 70.3
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 6.9e-61 237.7 158 72.8
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 69.0
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.4e-60 235.3 156 70.5
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 7.7e-60 234.2 143 76.2
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 67.8
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 67.8
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 67.2
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 5.5e-58 228.0 174 66.1
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 2.1e-57 226.1 146 75.3
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 3.6e-57 225.3 174 64.4
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 2.3e-56 222.6 173 63.0
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 3.9e-56 221.9 174 64.4
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 2.0e-55 219.5 174 63.8
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.3e-54 216.9 174 62.6
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 2.4e-53 212.6 147 72.1
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 1.3e-51 206.8 122 77.9
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.2e-51 206.1 174 58.6
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 5.0e-51 204.9 174 58.0
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 5.0e-51 204.9 174 59.2
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 6.5e-51 204.5 174 60.9
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 4.2e-50 201.8 174 58.6
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 4.2e-50 201.8 122 74.6
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 7.2e-50 201.1 176 62.5
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.7e-49 199.1 122 74.6
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 4.7e-49 198.4 196 54.1
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 6.1e-49 198.0 172 58.7
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 8.0e-49 197.6 172 58.7
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 4.4e-47 191.8 175 55.4
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 4.1e-45 185.3 171 57.3
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.6e-44 182.6 239 44.4
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 4.5e-44 181.8 182 54.4
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 8.0e-41 171.0 174 50.6
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 1.3e-38 163.7 177 48.6
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 3.7e-38 162.2 94 78.7
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 4.8e-38 161.8 95 75.8
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 5.3e-37 158.3 127 69.3
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 9.1e-37 157.5 93 77.4
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 9.1e-37 157.5 173 50.3
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 2.7e-36 156.0 173 44.5
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.7e-36 156.0 94 74.5
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 5.9e-36 154.8 119 66.4
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.2e-32 141.7 96 65.6
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 2.8e-30 136.0 126 60.3
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 5.7e-23 111.7 168 36.9
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 1.8e-21 106.7 81 59.3
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 3.3e-18 95.9 85 56.5
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.6e-18 95.1 55 74.5
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.3e-16 89.7 53 75.5
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 4.0e-16 89.0 176 30.7
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.9e-14 82.8 48 75.0
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.7e-11 73.6 94 45.7
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 6.6e-11 71.6 173 28.9
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.1e-10 70.9 38 78.9
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 3.3e-10 69.3 157 34.4
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.1e-09 66.6 50 64.0


User provided reference genes

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