Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 4.3e-90 334.7 181 100.0
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 6.7e-83 310.8 181 91.2
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 2.5e-82 308.9 181 91.7
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 2.5e-82 308.9 181 91.7
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 5.7e-82 307.8 181 91.7
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 7.4e-82 307.4 180 91.7
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.3e-81 306.6 181 89.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.3e-81 306.6 181 89.5
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 1.7e-81 306.2 180 91.1
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 1.1e-80 303.5 181 90.6
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 1.1e-80 303.5 181 90.6
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.4e-80 303.1 181 89.0
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.4e-80 303.1 181 89.0
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.4e-80 302.4 180 92.2
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 2.6e-79 298.9 181 88.4
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.4e-79 298.5 182 90.7
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.9e-78 295.4 182 90.1
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 3.8e-78 295.0 182 90.1
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 2.5e-77 292.4 182 87.9
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.0e-59 233.8 180 70.6
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 8.3e-57 224.2 185 65.4
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.7e-54 216.5 185 65.4
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.6e-52 209.9 185 63.2
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 2.1e-36 156.4 193 53.4
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.8e-35 153.3 177 51.4
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 7.5e-34 147.9 185 52.4
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 6.4e-33 144.8 187 51.3
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.1e-32 144.1 185 50.3
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 3.2e-32 142.5 180 48.9
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 5.4e-32 141.7 189 49.7
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 2.7e-31 139.4 184 49.5
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 2.7e-31 139.4 184 49.5
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.7e-31 139.4 183 49.2
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 7.8e-31 137.9 181 49.2
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.0e-30 137.5 182 47.8
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 1.0e-30 137.5 184 44.0
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 1.7e-30 136.7 178 50.6
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 5.0e-30 135.2 189 47.6
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 5.0e-30 135.2 182 48.9
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.0e-30 135.2 185 48.6
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.1e-29 134.0 185 48.6
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.5e-29 133.7 175 49.7
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 1.5e-29 133.7 181 47.0
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.9e-29 133.3 183 49.2
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.5e-29 132.9 189 48.1
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.3e-29 132.5 188 45.2
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.3e-29 132.1 185 47.6
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.3e-29 132.1 183 47.5
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.3e-29 131.3 176 47.2
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.6e-28 130.2 190 46.3
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.6e-28 129.0 186 45.2
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 6.2e-28 128.3 184 46.7
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.4e-27 127.1 184 44.0
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.4e-27 127.1 181 47.5
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.8e-27 126.7 179 46.4
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.1e-27 125.9 174 47.7
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.1e-27 125.9 179 46.4
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 5.2e-27 125.2 181 43.6
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 5.2e-27 125.2 184 47.8
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 1.5e-26 123.6 201 45.3
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.0e-26 123.2 179 43.6
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.6e-26 122.9 178 44.9
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.4e-26 122.5 182 45.6
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 4.4e-26 122.1 183 45.4
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 5.8e-26 121.7 188 45.2
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.3e-25 120.6 186 45.2
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.2e-25 119.8 183 45.4
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.7e-25 119.0 204 41.7
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 4.9e-25 118.6 188 43.1
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 6.4e-25 118.2 177 45.8
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 8.3e-25 117.9 191 41.9
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 8.3e-25 117.9 188 41.0
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.4e-24 116.3 181 43.1
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 4.1e-24 115.5 181 43.1
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 5.4e-24 115.2 188 42.0
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 7.0e-24 114.8 185 44.3
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 7.0e-24 114.8 181 42.0
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 7.0e-24 114.8 188 43.1
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 9.2e-24 114.4 184 41.8
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.5e-23 112.5 188 42.0
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 3.5e-23 112.5 179 43.6
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 4.6e-23 112.1 177 45.2
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 7.8e-23 111.3 190 39.5
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.7e-22 110.2 185 40.0
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 2.3e-22 109.8 177 44.1
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 3.0e-22 109.4 186 45.7
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 3.0e-22 109.4 181 42.0
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.9e-22 109.0 188 38.3
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.5e-21 106.3 171 45.6
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.5e-21 106.3 178 42.7
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 3.3e-21 105.9 182 41.8
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 3.3e-21 105.9 178 42.1
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 7.3e-21 104.8 180 40.6
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.6e-20 103.6 187 41.2
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 1.6e-20 103.6 190 39.5
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.1e-20 103.2 180 40.0
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.1e-20 103.2 182 38.5
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 2.8e-20 102.8 148 49.3
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 2.8e-20 102.8 188 41.5
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 4.7e-20 102.1 178 40.4
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 1.1e-19 100.9 183 39.3
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 1.1e-19 100.9 188 38.3
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.4e-19 100.5 181 40.9
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.8e-19 100.1 168 38.7
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 5.2e-19 98.6 172 39.5
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 6.8e-19 98.2 187 38.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 2.0e-18 96.7 168 41.7
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.4e-18 95.9 183 41.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 7.5e-18 94.7 175 38.9
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 9.9e-18 94.4 171 36.8
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 2.2e-17 93.2 161 39.8
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-17 92.8 171 36.8
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 2.9e-17 92.8 171 36.8
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 2.9e-17 92.8 180 35.0
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.7e-17 92.4 180 38.9
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-17 92.4 171 36.8
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.7e-17 92.4 171 36.8
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 8.3e-17 91.3 187 36.9
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-16 90.9 180 38.3
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.1e-16 90.9 161 42.2
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 2.4e-16 89.7 158 41.8
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 2.4e-16 89.7 159 43.4
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-16 89.4 171 35.7
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.1e-16 89.0 148 44.6
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 4.1e-16 89.0 171 38.6
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 5.4e-16 88.6 157 44.6
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 7.1e-16 88.2 171 36.8
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.7e-15 86.3 152 42.8
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.7e-14 83.6 171 35.1
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.7e-14 83.6 149 39.6
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 3.9e-14 82.4 181 39.8
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 3.9e-14 82.4 167 38.3
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.6e-14 81.3 133 39.1
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 1.1e-13 80.9 171 35.1
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.5e-13 80.5 95 50.5
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.9e-13 80.1 167 38.9
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.5e-13 79.7 165 35.2
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 5.6e-13 78.6 151 39.1
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.1e-11 74.3 177 32.8
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 2.4e-11 73.2 119 42.9
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 3.1e-11 72.8 190 32.6
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 6.8e-11 71.6 181 35.4
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 8.9e-11 71.2 186 32.3
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 5.8e-10 68.6 178 30.3
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 8.4e-09 64.7 93 40.9
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.5e-07 59.3 178 31.5
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 3.5e-07 59.3 155 32.9
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 2.3e-06 56.6 156 30.1
SMO144G0179 Selaginella moellendorffii HOM05D026704 ORTHO05D030102 2.3e-06 56.6 150 26.7
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 8.7e-06 54.7 101 37.6
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 8.7e-06 54.7 186 28.5
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 8.7e-06 54.7 50 54.0


User provided reference genes

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