Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 3.5e-86 321.6 167 100.0
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 4.5e-49 198.4 153 67.3
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 5.8e-49 198.0 161 65.2
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 1.3e-48 196.8 161 65.2
C07p57610 Brassica napus HOM05D005423 ORTHO05D006223 1.2e-41 173.7 161 60.9
BolC7t46226H Brassica oleracea HOM05D005423 ORTHO05D006223 1.1e-39 167.2 161 59.0
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.2e-38 163.7 165 53.3
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.4e-31 140.2 145 51.0
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 3.3e-28 129.0 131 51.9
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 3.3e-28 129.0 131 51.9
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 1.3e-27 127.1 155 46.5
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 1.3e-27 127.1 155 46.5
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 6.3e-27 124.8 146 47.3
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.1e-26 124.0 134 49.3
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.3e-26 121.7 162 42.6
Carub.0007s1174 Capsella rubella HOM05D005423 ORTHO05D006223 2.0e-25 119.8 151 45.7
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 7.7e-25 117.9 160 41.9
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.7e-24 116.7 132 48.5
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 5.5e-23 111.7 155 40.0
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 9.4e-23 110.9 139 44.6
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 2.8e-19 99.4 175 41.1
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 2.8e-19 99.4 175 41.1
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 4.8e-19 98.6 171 40.9
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 6.3e-19 98.2 171 40.4
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 8.2e-19 97.8 145 41.4
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.1e-18 97.4 175 40.6
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.8e-18 96.7 167 37.1
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 2.4e-18 96.3 169 38.5
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 5.3e-18 95.1 177 39.0
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 7.0e-18 94.7 170 37.6
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 7.0e-18 94.7 171 35.7
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.0e-17 93.2 171 38.6
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 2.0e-17 93.2 161 36.6
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 2.6e-17 92.8 166 40.4
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.9e-16 89.4 176 38.1
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-15 87.4 163 37.4
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.1e-15 87.4 164 38.4
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.1e-15 87.4 130 37.7
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 1.5e-15 87.0 164 38.4
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.9e-15 86.7 176 35.8
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 9.4e-15 84.3 87 49.4
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.4e-13 80.5 132 37.1
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 8.8e-13 77.8 153 34.6
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 1.5e-12 77.0 129 41.1
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.0e-12 76.6 135 34.8
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 2.6e-12 76.3 147 34.0
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 3.3e-12 75.9 133 34.6
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 4.4e-12 75.5 135 34.1
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 5.7e-12 75.1 147 32.7
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 7.5e-12 74.7 131 38.9
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 7.5e-12 74.7 141 31.2
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 9.7e-12 74.3 134 37.3
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 9.7e-12 74.3 100 44.0
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 9.7e-12 74.3 147 33.3
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.3e-11 73.9 93 45.2
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 1.7e-11 73.6 140 35.0
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 1.7e-11 73.6 127 38.6
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.2e-11 73.2 129 37.2
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 2.2e-11 73.2 106 40.6
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 2.2e-11 73.2 106 40.6
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.8e-11 72.8 141 32.6
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 2.8e-11 72.8 129 33.3
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 3.7e-11 72.4 129 36.4
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.8e-11 72.0 141 32.6
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.1e-10 70.9 74 47.3
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.1e-10 70.9 144 30.6
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 1.1e-10 70.9 154 31.8
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 1.4e-10 70.5 153 32.0
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.4e-10 70.5 134 35.1
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.8e-10 70.1 134 31.3
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.8e-10 70.1 130 33.8
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.4e-10 69.7 134 32.1
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.4e-10 69.7 140 35.7
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 2.4e-10 69.7 128 35.9
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 2.4e-10 69.7 161 32.3
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 3.1e-10 69.3 138 31.9
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 3.1e-10 69.3 152 31.6
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 3.1e-10 69.3 81 44.4
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.1e-10 68.9 83 42.2
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.0e-10 68.2 134 32.1
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.0e-10 68.2 83 42.2
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 7.0e-10 68.2 114 35.1
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 9.1e-10 67.8 144 36.1
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.2e-09 67.4 129 28.7
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.2e-09 67.4 134 29.9
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.6e-09 67.0 137 34.3
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.0e-09 66.6 105 35.2
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 2.0e-09 66.6 137 34.3
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.7e-09 66.2 143 28.7
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 2.7e-09 66.2 160 32.5
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 2.7e-09 66.2 98 35.7
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.5e-09 65.9 148 29.7
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 3.5e-09 65.9 146 32.2
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 3.5e-09 65.9 146 32.2
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 3.5e-09 65.9 136 34.6
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 4.5e-09 65.5 127 31.5
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 5.9e-09 65.1 146 32.2
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 7.7e-09 64.7 81 42.0
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 1.3e-08 63.9 150 30.0
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 2.9e-08 62.8 151 30.5
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 3.8e-08 62.4 76 51.3
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 5.0e-08 62.0 130 33.8
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 5.0e-08 62.0 136 30.1
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 6.5e-08 61.6 99 34.3
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 1.5e-07 60.5 76 47.4
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.5e-07 60.5 104 35.6
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 1.9e-07 60.1 101 34.7
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.6e-06 55.8 91 31.9
Thhalv10027213m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 4.7e-06 55.5 43 60.5
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 4.7e-06 55.5 74 36.5
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 8.0e-06 54.7 173 24.9


User provided reference genes

Program Settings