Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 9.4e-116 421.0 368 100.0
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 8.8e-98 361.3 368 83.4
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 8.8e-98 361.3 368 83.4
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.3e-96 357.5 368 90.2
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 2.8e-96 356.3 368 89.9
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 2.8e-96 356.3 373 81.5
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.2e-89 334.3 374 78.6
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.6e-83 312.8 374 74.1
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.0e-82 309.7 370 74.9
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 6.8e-82 308.5 375 79.2
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.2e-78 297.7 370 76.2
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 4.1e-63 246.1 379 62.5
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.2e-62 244.6 385 62.9
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.3e-60 236.5 382 61.5
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 6.8e-58 228.8 386 59.6
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 6.8e-58 228.8 386 59.6
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 6.8e-58 228.8 386 59.6
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 6.8e-58 228.8 386 59.6
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 8.9e-58 228.4 386 60.1
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 9.8e-57 224.9 373 63.5
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.3e-56 224.6 385 59.5
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 9.2e-55 218.4 391 58.6
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 1.3e-53 214.5 324 68.8
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 2.5e-52 210.3 324 64.2
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.6e-51 207.6 324 62.0
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 2.1e-51 207.2 324 67.6
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.1e-51 207.2 324 67.3
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.7e-51 206.1 324 67.3
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.1e-50 204.9 324 61.4
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.6e-46 191.0 331 54.4
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 7.8e-46 188.7 348 69.5
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 2.5e-44 183.7 324 64.2
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.3e-44 183.3 400 53.5
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 4.3e-44 183.0 326 66.0
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 4.3e-44 183.0 326 66.0
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 5.6e-44 182.6 325 59.4
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 1.6e-43 181.0 348 62.9
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 2.1e-43 180.6 325 64.3
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 4.0e-42 176.4 329 65.0
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 8.9e-42 175.3 344 62.2
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 1.3e-40 171.4 325 60.3
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 2.2e-40 170.6 326 58.3
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 2.9e-40 170.2 324 61.1
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 1.1e-39 168.3 326 57.1
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 1.1e-39 168.3 324 64.5
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 1.4e-39 167.9 324 61.4
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 2.4e-39 167.2 324 59.6
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 4.2e-39 166.4 327 58.7
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 5.4e-39 166.0 323 59.1
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.6e-38 164.5 325 64.0
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.6e-38 164.5 326 62.6
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 2.1e-38 164.1 350 56.6
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.5e-38 163.3 314 62.4
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 1.0e-37 161.8 352 60.2
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 1.3e-37 161.4 326 57.1
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 5.1e-37 159.5 332 58.4
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 8.7e-37 158.7 334 63.8
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 4.3e-36 156.4 329 58.4
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 4.3e-36 156.4 368 53.8
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 4.3e-36 156.4 354 44.6
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 9.6e-36 155.2 325 59.4
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 1.6e-35 154.5 345 55.4
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 2.1e-35 154.1 323 68.1
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 4.7e-35 152.9 104 75.0
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 6.2e-35 152.5 386 43.3
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.4e-34 151.4 335 60.3
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.8e-34 151.0 327 63.6
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 4.0e-34 149.8 326 57.4
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 6.9e-34 149.1 329 61.7
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 3.4e-33 146.7 329 61.1
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 5.8e-33 146.0 330 49.4
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.3e-32 144.8 306 59.8
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.7e-32 144.4 325 59.7
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.7e-32 144.4 369 52.0
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 1.7e-32 144.4 350 58.3
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 3.8e-32 143.3 332 53.6
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 3.8e-32 143.3 332 53.6
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 3.8e-32 143.3 321 62.9
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 6.4e-32 142.5 312 56.4
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 6.4e-32 142.5 317 63.1
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 6.4e-32 142.5 326 55.5
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 6.4e-32 142.5 324 60.2
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 6.4e-32 142.5 364 57.1
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 6.4e-32 142.5 325 60.9
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.1e-31 141.7 326 51.2
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 3.2e-31 140.2 324 55.9
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 7.1e-31 139.0 329 60.5
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 7.1e-31 139.0 312 62.5
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 9.3e-31 138.7 289 67.1
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 6.0e-30 136.0 329 63.2
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 6.0e-30 136.0 352 62.8
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 7.8e-30 135.6 323 56.0
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 1.0e-29 135.2 327 53.8
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.0e-29 135.2 323 54.5
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.7e-29 134.4 326 60.1
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 3.9e-29 133.3 319 57.4
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 9.6e-28 128.6 346 56.4
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.6e-27 127.9 276 60.9
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.1e-27 127.5 342 52.6
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 8.1e-27 125.6 313 56.5
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 8.1e-27 125.6 345 55.4
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.1e-26 123.6 328 58.5
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 3.1e-26 123.6 317 45.4
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 4.0e-26 123.2 337 49.6
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.2e-25 121.7 325 53.8
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 3.4e-25 120.2 339 57.2
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 4.5e-25 119.8 360 56.1
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 5.8e-25 119.4 324 45.4
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.3e-24 118.2 326 55.8
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.7e-24 117.9 323 57.9
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.7e-24 117.9 322 58.7
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 2.2e-24 117.5 100 65.0
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 3.8e-24 116.7 344 57.3
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 3.8e-24 116.7 255 58.0
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 3.8e-24 116.7 255 58.0
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 4.9e-24 116.3 335 56.1
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 6.4e-24 115.9 324 53.1
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 6.4e-24 115.9 317 52.4
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 6.4e-24 115.9 330 57.6
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 6.4e-24 115.9 329 56.8
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 8.4e-24 115.5 343 54.8
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 1.4e-23 114.8 336 48.2
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 1.4e-23 114.8 357 51.5
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.4e-23 114.0 314 57.0
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.4e-23 114.0 337 54.9
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.2e-23 113.6 305 57.4
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 4.2e-23 113.2 321 57.3
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 4.2e-23 113.2 255 57.6
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 4.2e-23 113.2 320 62.5
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 4.2e-23 113.2 320 62.5
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 5.4e-23 112.8 324 42.6
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 7.1e-23 112.5 307 64.5
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 9.3e-23 112.1 332 55.7
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 2.1e-22 110.9 332 53.9
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 2.7e-22 110.5 327 52.9
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 4.6e-22 109.8 336 42.3
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 7.9e-22 109.0 322 57.1
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.0e-21 108.6 318 57.5
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.3e-21 108.2 305 51.5
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 8.7e-21 105.5 332 55.4
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 8.7e-21 105.5 332 55.4
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 8.7e-21 105.5 348 61.2
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 8.7e-21 105.5 330 56.7
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 3.3e-20 103.6 332 55.4
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 5.6e-20 102.8 324 52.2
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 9.6e-20 102.1 368 57.1
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 9.6e-20 102.1 321 58.6
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-19 101.7 307 57.7
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.3e-19 101.7 324 57.1
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.3e-19 101.7 320 61.2
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 2.8e-19 100.5 364 52.7
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 2.8e-19 100.5 330 56.7
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.7e-19 100.1 97 59.8
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 3.7e-19 100.1 357 40.9
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.1e-18 98.6 311 35.0
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 1.4e-18 98.2 359 52.6
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.8e-18 97.8 105 54.3
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 2.4e-18 97.4 108 53.7
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 3.1e-18 97.1 105 57.1
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 4.0e-18 96.7 324 61.7
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 4.0e-18 96.7 328 56.7
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.2e-17 95.1 101 54.5
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.6e-17 94.0 264 62.9
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 4.5e-17 93.2 326 46.9
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 4.5e-17 93.2 323 57.9
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 4.5e-17 93.2 323 57.9
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 4.5e-17 93.2 323 57.9
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 5.8e-17 92.8 208 64.9
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 5.8e-17 92.8 292 54.1
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.7e-16 91.3 106 53.8
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 2.7e-14 84.0 197 57.9
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 3.5e-14 83.6 96 49.0
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 3.5e-14 83.6 103 49.5
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 4.6e-14 83.2 79 55.7
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 6.0e-14 82.8 295 50.5
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 1.0e-13 82.0 295 50.5
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.0e-13 82.0 81 55.6
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.0e-13 82.0 109 45.9
BraA07t29361Z Brassica rapa HOM05D003453 ORTHO05D042392 8.7e-13 79.0 103 45.6
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 8.7e-13 79.0 355 51.5
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 8.7e-13 79.0 142 70.4
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 8.7e-13 79.0 286 46.2
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 3.3e-12 77.0 97 50.5
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 7.4e-12 75.9 45 80.0
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 6.2e-11 72.8 125 72.8
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 6.5e-08 62.8 319 51.7


User provided reference genes

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