Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.7e-77 291.6 159 100.0
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 4.5e-75 284.6 159 97.5
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 1.5e-73 279.6 159 96.2
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 9.4e-73 276.9 159 95.0
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 1.6e-72 276.2 159 95.0
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 1.6e-72 276.2 159 95.0
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.6e-72 276.2 159 95.0
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 3.6e-72 275.0 159 94.3
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 3.6e-72 275.0 159 94.3
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.7e-72 274.6 159 94.3
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 1.0e-71 273.5 159 93.7
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 5.9e-67 257.7 158 88.6
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 1.6e-64 249.6 150 92.7
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 1.6e-64 249.6 150 92.7
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 2.1e-64 249.2 148 91.9
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 4.5e-59 231.5 159 81.1
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 1.6e-51 206.5 148 77.7
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 1.6e-51 206.5 148 77.7
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 2.3e-47 192.6 149 75.8
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 2.4e-44 182.6 149 65.8
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 5.4e-44 181.4 155 65.8
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 7.0e-44 181.0 151 64.9
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 2.0e-43 179.5 163 62.0
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 7.8e-43 177.6 150 62.7
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 1.0e-42 177.2 160 60.6
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 1.3e-42 176.8 144 65.3
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 1.7e-42 176.4 140 67.1
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 5.0e-42 174.9 147 72.8
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.5e-41 173.3 145 62.8
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.5e-41 173.3 165 58.2
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 1.9e-41 172.9 148 61.5
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.9e-41 172.9 144 63.9
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.9e-41 172.9 144 63.9
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.9e-41 172.9 157 59.9
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 3.3e-41 172.2 163 58.3
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.3e-41 171.8 144 63.2
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 9.5e-41 170.6 160 58.8
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.2e-40 170.2 154 60.4
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.2e-40 170.2 141 64.5
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.6e-40 169.9 154 61.7
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 1.6e-40 169.9 169 56.2
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-40 169.9 157 59.2
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 2.1e-40 169.5 157 59.2
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.1e-40 169.5 147 61.2
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.6e-40 168.7 156 59.0
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.6e-40 168.7 156 59.0
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.6e-40 168.7 153 60.8
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 6.2e-40 167.9 142 64.8
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 6.2e-40 167.9 142 64.8
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 6.2e-40 167.9 142 64.8
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 6.2e-40 167.9 141 64.5
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 6.2e-40 167.9 169 55.6
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 6.2e-40 167.9 141 64.5
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 8.1e-40 167.5 142 64.8
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 8.1e-40 167.5 142 64.8
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 8.1e-40 167.5 147 61.2
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 8.1e-40 167.5 147 61.2
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 8.1e-40 167.5 147 61.2
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 8.1e-40 167.5 149 60.4
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 8.1e-40 167.5 141 64.5
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.1e-39 167.2 155 58.1
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.4e-39 166.8 141 63.8
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.4e-39 166.8 141 63.8
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.4e-39 166.8 143 62.9
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 1.4e-39 166.8 157 59.2
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-39 166.4 143 63.6
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-39 166.4 143 63.6
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 1.8e-39 166.4 157 58.6
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 2.3e-39 166.0 158 58.9
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 3.1e-39 165.6 157 58.6
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 3.1e-39 165.6 157 58.6
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 3.1e-39 165.6 157 58.6
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.1e-39 165.6 151 58.9
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 4.0e-39 165.2 139 63.3
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 5.2e-39 164.9 159 57.2
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 5.2e-39 164.9 171 55.0
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 6.8e-39 164.5 147 59.9
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 8.9e-39 164.1 158 56.3
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 1.2e-38 163.7 158 58.2
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.5e-38 163.3 144 59.7
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 1.5e-38 163.3 152 60.5
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 2.6e-38 162.5 141 59.6
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 7.5e-38 161.0 149 59.7
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 9.8e-38 160.6 142 59.2
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 9.8e-38 160.6 154 59.1
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 1.7e-37 159.8 174 55.7
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 1.7e-37 159.8 136 64.7
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 2.2e-37 159.5 142 60.6
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 2.9e-37 159.1 151 53.6
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 3.7e-37 158.7 156 56.4
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.7e-37 158.7 154 55.8
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 4.9e-37 158.3 146 58.2
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 4.9e-37 158.3 147 57.8
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 8.3e-37 157.5 155 55.5
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 8.3e-37 157.5 143 58.0
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.1e-36 157.1 130 62.3
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.4e-36 156.8 136 61.0
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 2.4e-36 156.0 135 60.7
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.4e-36 156.0 158 54.4
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 3.2e-36 155.6 149 57.7
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 7.1e-36 154.5 139 61.9
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 9.2e-36 154.1 155 54.8
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 1.2e-35 153.7 146 54.8
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 1.2e-35 153.7 164 51.8
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 1.2e-35 153.7 158 54.4
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 2.7e-35 152.5 149 53.7
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 7.8e-35 151.0 159 53.5
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 7.8e-35 151.0 158 54.4
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 1.0e-34 150.6 151 54.3
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 1.0e-34 150.6 143 56.6
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 1.3e-34 150.2 148 55.4
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 1.3e-34 150.2 148 55.4
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 2.3e-34 149.4 142 57.7
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 3.9e-34 148.7 137 58.4
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 5.1e-34 148.3 148 54.1
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 6.6e-34 147.9 147 55.1
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 1.5e-33 146.7 138 55.8
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 2.5e-33 146.0 155 51.0
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 4.3e-33 145.2 135 57.8
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 7.3e-33 144.4 143 54.5
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 9.5e-33 144.1 140 55.7
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 1.2e-32 143.7 140 56.4
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 1.2e-32 143.7 157 51.0
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 1.2e-32 143.7 141 53.9
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.2e-32 143.7 133 57.1
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 2.1e-32 142.9 139 56.1
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.4e-31 140.2 129 57.4
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.3e-31 139.4 130 56.9
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 3.1e-31 139.0 146 52.7
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 3.1e-31 139.0 122 63.1
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 5.2e-31 138.3 141 52.5
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 2.6e-30 136.0 134 54.5
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.4e-28 129.4 126 56.3
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 3.2e-28 129.0 142 53.5
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 9.2e-28 127.5 123 57.7
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 2.7e-27 125.9 137 56.2
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 2.7e-27 125.9 137 53.3
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 6.0e-27 124.8 141 49.6
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 1.0e-26 124.0 152 49.3
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.3e-26 122.9 157 48.4
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 3.3e-25 119.0 99 63.6
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 4.3e-25 118.6 121 52.1
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 1.2e-24 117.1 136 51.5
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 4.7e-24 115.2 116 56.9
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 8.1e-24 114.4 133 51.9
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.8e-23 113.2 150 49.3
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.4e-23 112.8 113 55.8
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 4.0e-23 112.1 90 64.4
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 6.8e-23 111.3 118 51.7
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 6.8e-23 111.3 89 64.0
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.5e-22 110.2 90 63.3
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 2.9e-21 105.9 150 44.0
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 5.4e-20 101.7 139 45.3
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 1.6e-19 100.1 128 50.0
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 1.6e-19 100.1 92 58.7
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.5e-19 99.0 88 61.4
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 4.6e-19 98.6 129 47.3
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.0e-18 97.4 119 47.1
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 1.5e-17 93.6 115 43.5
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-14 82.8 122 43.4
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 4.2e-12 75.5 124 45.2
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 4.6e-11 72.0 75 53.3
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.7e-10 70.1 69 53.6
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.6e-08 63.5 137 31.4
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 6.2e-08 61.6 76 46.1
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 8.1e-08 61.2 88 40.9
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 4.0e-07 58.9 90 37.8
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 4.0e-07 58.9 101 39.6
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 5.3e-07 58.5 112 41.1
Zm00001eb090900 Zea mays HOM05D003772 ORTHO05D004509 5.3e-07 58.5 68 50.0
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 6.9e-07 58.2 84 41.7
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 9.0e-07 57.8 51 54.9
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 9.0e-07 57.8 86 43.0
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 1.5e-06 57.0 96 33.3
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 1.5e-06 57.0 72 45.8
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.5e-06 57.0 132 33.3
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 2.0e-06 56.6 96 33.3
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.4e-06 55.8 56 51.8
ClCG02G017670 Citrullus lanatus HOM05D003772 ORTHO05D004509 4.5e-06 55.5 78 48.7
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 7.6e-06 54.7 70 42.9
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 7.6e-06 54.7 92 39.1
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 9.9e-06 54.3 126 32.5


User provided reference genes

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