Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.9e-177 625.2 326 100.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.1e-151 539.3 329 85.1
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.6e-143 513.1 330 81.2
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.1e-141 506.9 327 81.3
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 2.0e-141 506.1 335 79.1
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.3e-141 505.4 330 82.1
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 4.4e-141 505.0 330 82.1
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 9.7e-141 503.8 327 80.1
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 4.1e-139 498.4 329 82.4
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 4.5e-138 495.0 330 81.8
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 3.8e-137 491.9 330 80.3
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 3.8e-137 491.9 330 80.3
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 4.8e-132 474.9 338 75.7
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.1e-131 473.8 337 74.8
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 5.9e-130 468.0 339 75.2
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.5e-128 462.6 341 74.5
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.1e-127 459.5 340 74.1
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.3e-126 456.1 336 74.4
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.3e-124 450.3 342 71.9
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.0e-122 443.0 339 71.7
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 1.9e-120 436.4 332 74.1
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.2e-120 435.3 342 71.1
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.6e-119 432.2 329 72.0
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 4.7e-119 431.8 332 73.5
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-117 427.2 333 72.1
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.3e-116 423.7 332 71.4
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 7.0e-115 417.9 333 71.5
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.5e-114 415.2 340 70.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 4.3e-112 408.7 337 69.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 4.3e-112 408.7 337 69.4
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.6e-111 405.6 341 69.8
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.8e-110 403.3 335 65.1
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.8e-110 403.3 341 64.8
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.3e-110 402.9 342 64.0
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.0e-109 399.8 346 63.3
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 4.4e-109 398.7 338 68.3
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 4.4e-109 398.7 342 63.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.7e-108 395.6 354 62.1
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.2e-106 390.6 344 62.8
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.3e-105 386.3 344 62.8
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.3e-105 386.3 341 61.9
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.0e-105 386.0 344 63.1
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.9e-105 385.6 341 61.9
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.9e-104 383.3 341 62.2
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 4.3e-104 382.1 343 62.1
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 2.8e-103 379.4 349 61.0
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.2e-103 378.3 344 62.2
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.1e-102 377.5 350 60.0
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.2e-102 375.2 344 60.5
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 6.8e-102 374.8 343 61.5
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.4e-101 372.5 344 60.5
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 4.4e-101 372.1 344 60.2
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 4.4e-101 372.1 344 59.9
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.9e-100 369.4 352 61.1
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.7e-100 369.0 344 59.6
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.7e-100 369.0 345 60.6
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.3e-100 367.9 342 61.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 8.3e-100 367.9 343 60.3
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.9e-99 366.7 348 60.1
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.9e-99 366.7 345 62.0
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.9e-99 366.7 344 60.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 5.4e-99 365.2 344 60.2
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.6e-98 363.6 344 60.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.6e-98 362.1 342 60.5
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.0e-97 359.4 342 60.2
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.9e-97 359.0 343 58.9
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.9e-97 359.0 341 59.8
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 8.6e-97 357.8 347 60.2
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.3e-96 355.5 335 60.3
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.3e-96 355.5 335 60.9
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.1e-95 353.2 345 59.4
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.8e-94 350.1 344 60.5
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.1e-94 349.4 344 58.1
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 3.1e-94 349.4 341 56.9
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 4.0e-94 349.0 346 59.5
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.8e-94 348.2 344 60.2
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.2e-93 347.4 345 59.4
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 1.5e-93 347.1 341 57.8
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.6e-93 346.3 327 61.8
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 5.8e-93 345.1 343 58.3
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 7.5e-93 344.7 404 53.2
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 2.2e-92 343.2 388 55.2
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 2.9e-92 342.8 343 58.3
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 6.4e-92 341.7 347 59.4
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 8.3e-92 341.3 345 58.3
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 1.4e-91 340.5 344 58.4
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 3.2e-91 339.3 342 58.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 9.2e-91 337.8 338 58.6
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 9.2e-91 337.8 344 56.1
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 9.2e-91 337.8 347 58.5
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.2e-90 337.4 388 51.8
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 2.7e-90 336.3 335 57.0
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.5e-90 335.9 339 56.6
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 3.5e-90 335.9 346 59.2
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 7.8e-90 334.7 344 58.7
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.7e-89 333.6 347 58.8
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 6.6e-89 331.6 347 57.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 6.6e-89 331.6 413 51.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 8.6e-89 331.3 339 59.3
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 1.1e-88 330.9 346 56.6
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.5e-88 330.5 344 57.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.5e-88 329.7 346 56.4
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 5.6e-88 328.6 347 56.8
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 2.8e-87 326.2 327 59.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.8e-86 323.6 348 56.3
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 2.4e-86 323.2 329 59.6
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.4e-86 323.2 344 54.4
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.1e-86 322.8 343 55.4
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 4.0e-86 322.4 344 55.2
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 5.2e-86 322.0 344 55.2
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 6.8e-86 321.6 357 55.5
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 1.5e-85 320.5 345 55.9
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 2.6e-85 319.7 342 57.0
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.9e-84 316.2 329 57.1
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 3.8e-84 315.8 326 58.3
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.9e-84 315.5 347 56.2
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.4e-83 313.9 317 60.9
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 4.1e-83 312.4 344 54.9
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.6e-82 310.5 193 85.5
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.6e-82 310.5 281 60.1
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 4.6e-82 308.9 345 54.2
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.0e-82 308.5 345 53.0
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 3.0e-81 306.2 348 55.5
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 3.9e-81 305.8 299 58.5
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.5e-80 303.1 342 53.5
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 2.5e-80 303.1 325 54.5
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 5.6e-80 302.0 352 51.7
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 2.1e-79 300.1 334 55.4
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 3.1e-78 296.2 345 53.0
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.2e-77 294.3 340 52.4
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 7.6e-77 291.6 340 52.1
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.9e-76 289.7 340 51.8
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 7.1e-75 285.0 354 50.6
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 7.8e-74 281.6 341 49.9
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.0e-73 281.2 228 68.9
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.1e-73 278.9 342 49.7
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 7.6e-69 265.0 347 49.0
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.7e-68 263.8 349 49.0
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.2e-68 263.5 243 60.5
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 4.9e-68 262.3 262 60.3
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 6.4e-68 261.9 331 50.2
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.2e-67 259.6 255 59.2
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.8e-62 243.8 311 51.1
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 9.3e-59 231.5 335 49.3
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 3.3e-56 223.0 257 52.9
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 9.3e-51 204.9 344 43.9
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.9e-35 154.1 247 42.1
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 2.3e-33 147.1 401 31.9
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.9e-33 146.4 327 34.6
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.6e-26 124.4 139 51.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.7e-20 104.4 156 44.9
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 5.7e-16 89.4 256 28.5
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.8e-15 87.0 153 39.9
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 2.0e-13 80.9 106 46.2
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 5.5e-11 72.8 179 33.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.5e-08 64.7 352 25.0
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 5.7e-08 62.8 137 36.5
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 3.7e-07 60.1 265 25.3


User provided reference genes

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