Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.3e-54 216.1 103 100.0
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.0e-44 182.2 104 83.7
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.9e-42 175.6 103 84.5
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 3.3e-42 174.9 103 81.6
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.6e-41 171.4 103 80.6
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 4.7e-41 171.0 106 81.1
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 5.8e-39 164.1 107 75.7
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 9.8e-39 163.3 106 75.5
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 9.8e-39 163.3 106 75.5
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 2.2e-38 162.2 107 76.6
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-37 159.8 108 74.1
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 4.3e-34 147.9 97 75.3
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 4.3e-34 147.9 97 75.3
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 2.1e-33 145.6 95 74.7
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-32 143.3 95 74.7
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-32 143.3 97 72.2
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.4e-24 116.3 111 53.2
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 5.2e-24 114.4 107 54.2
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 6.8e-24 114.0 109 56.9
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 8.4e-22 107.1 106 49.1
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.4e-21 105.5 68 70.6
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.7e-20 102.1 68 69.1
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.0e-19 100.1 69 60.9
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 8.7e-19 97.1 64 70.3
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-18 96.3 63 71.4
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-18 96.3 63 71.4
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 1.5e-18 96.3 63 71.4
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-18 95.9 103 49.5
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 5.6e-18 94.4 103 49.5
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 3.6e-17 91.7 64 67.2
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 3.6e-17 91.7 64 67.2
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 4.8e-17 91.3 66 62.1
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 8.1e-17 90.5 103 47.6
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.1e-16 90.1 67 62.7
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-16 89.7 66 59.1
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-16 89.4 103 47.6
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 3.1e-16 88.6 62 64.5
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 5.3e-16 87.8 67 62.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.9e-16 87.4 68 61.8
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.9e-16 87.4 68 61.8
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.5e-15 86.3 71 59.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.4e-15 85.1 68 60.3
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 7.6e-15 84.0 68 54.4
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.3e-14 83.2 68 61.8
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.3e-14 83.2 68 60.3
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.7e-14 82.8 68 58.8
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 2.2e-14 82.4 64 57.8
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 3.8e-14 81.6 68 57.4
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 3.8e-14 81.6 63 61.9
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.9e-14 81.3 65 58.5
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 4.9e-14 81.3 68 51.5
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 8.4e-14 80.5 103 44.7
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 8.4e-14 80.5 63 60.3
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 8.4e-14 80.5 63 58.7
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.1e-13 80.1 68 58.8
BcaC08g43286 Brassica carinata HOM05D004137 ORTHO05D004804 1.4e-13 79.7 81 51.9
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 9.3e-13 77.0 73 46.6
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.2e-12 76.6 116 34.5
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.2e-12 76.6 69 52.2
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 2.1e-12 75.9 68 54.4
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 2.7e-12 75.5 60 63.3
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.7e-12 75.5 68 45.6
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.6e-12 74.7 68 47.1
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 7.8e-12 73.9 62 59.7
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 7.8e-12 73.9 83 44.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.0e-11 73.6 68 45.6
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.3e-11 73.2 69 47.8
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 3.0e-11 72.0 68 45.6
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 3.0e-11 72.0 73 43.8
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 3.0e-11 72.0 68 45.6
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 3.0e-11 72.0 68 45.6
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 3.0e-11 72.0 68 45.6
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 3.0e-11 72.0 73 43.8
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 3.0e-11 72.0 68 45.6
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 3.0e-11 72.0 63 54.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 5.1e-11 71.2 80 50.0
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 5.1e-11 71.2 107 43.0
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 5.1e-11 71.2 91 48.4
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 5.1e-11 71.2 63 57.1
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 6.6e-11 70.9 68 41.2
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 6.6e-11 70.9 68 41.2
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 6.6e-11 70.9 66 54.5
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 6.6e-11 70.9 63 57.1
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 8.7e-11 70.5 81 46.9
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 8.7e-11 70.5 68 44.1
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.5e-10 69.7 69 49.3
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 55.6
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 55.6
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 2.5e-10 68.9 73 39.7
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 2.5e-10 68.9 60 56.7
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 3.3e-10 68.6 45 71.1
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 3.3e-10 68.6 73 39.7
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 3.3e-10 68.6 63 55.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.3e-10 68.2 63 55.6
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 5.6e-10 67.8 93 38.7
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 5.6e-10 67.8 63 50.8
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 9.6e-10 67.0 51 68.6
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 9.6e-10 67.0 63 50.8
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-09 66.6 73 38.4
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.3e-09 66.6 89 37.1
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 1.3e-09 66.6 100 37.0
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.1e-09 65.9 62 51.6
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.8e-09 64.7 68 48.5
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 6.2e-09 64.3 68 41.2
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 8.1e-09 63.9 63 50.8
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.4e-08 63.2 63 52.4
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.8e-08 62.8 68 42.6
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.8e-08 62.8 68 48.5
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.1e-08 62.0 69 49.3
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 6.9e-08 60.8 49 55.1
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 6.9e-08 60.8 62 51.6
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 9.0e-08 60.5 68 42.6
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.5e-07 59.7 70 47.1
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 2.0e-07 59.3 79 43.0
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 5.8e-07 57.8 87 37.9
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-06 56.6 67 38.8
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.7e-06 56.2 59 42.4
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 1.7e-06 56.2 94 37.2
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 2.9e-06 55.5 64 46.9
BraA05t20644Z Brassica rapa HOM05D004137 ORTHO05D004804 3.8e-06 55.1 50 48.0
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.9e-06 54.7 62 37.1
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.9e-06 54.7 80 37.5


User provided reference genes

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