Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.8e-269 931.4 484 100.0
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.1e-159 567.4 483 68.9
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 1.9e-153 546.6 460 69.8
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 1.8e-143 513.5 459 66.9
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 2.4e-143 513.1 460 67.0
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 1.2e-142 510.8 458 66.6
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 2.6e-142 509.6 458 66.4
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 3.1e-127 459.5 472 60.0
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 4.2e-124 449.1 490 59.8
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 1.7e-88 330.9 414 55.6
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.4e-65 253.4 479 40.1
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 6.0e-62 242.7 496 40.5
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 3.0e-61 240.4 496 40.3
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 7.3e-60 235.7 411 43.1
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 9.6e-60 235.3 510 38.2
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 7.1e-55 219.2 486 39.3
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 9.3e-55 218.8 475 37.5
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.5e-52 211.5 390 41.5
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 8.1e-51 205.7 512 38.3
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 6.9e-50 202.6 507 38.1
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.0e-49 201.1 446 37.9
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 3.4e-49 200.3 442 38.5
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 8.4e-48 195.7 401 42.4
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 7.1e-31 139.4 455 31.0
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 1.2e-30 138.7 526 30.6
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 2.1e-30 137.9 331 34.4
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 4.6e-30 136.7 436 33.9
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 1.3e-29 135.2 437 32.7
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 2.8e-27 127.5 440 33.4
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.8e-27 127.5 263 39.9
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 3.7e-27 127.1 356 35.7
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 3.7e-27 127.1 403 30.8
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 6.3e-27 126.3 358 33.8
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 6.3e-27 126.3 271 38.4
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 2.4e-26 124.4 287 36.2
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.1e-26 124.0 322 34.8
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.1e-26 123.6 324 35.2
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 6.9e-26 122.9 356 32.6
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 1.2e-25 122.1 444 30.9
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 2.0e-25 121.3 488 29.3
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 2.0e-25 121.3 271 38.0
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 3.4e-25 120.6 328 35.1
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 7.7e-25 119.4 427 33.7
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.3e-24 118.6 322 33.9
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.3e-24 118.6 322 33.9
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 2.2e-24 117.9 402 34.3
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 3.8e-24 117.1 348 34.2
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 5.0e-24 116.7 322 33.5
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 8.5e-24 115.9 436 29.8
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.1e-23 115.5 373 31.1
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.5e-23 114.4 375 31.2
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 2.5e-23 114.4 333 34.2
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 5.5e-23 113.2 304 34.9
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 1.6e-22 111.7 349 32.4
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 1.6e-22 111.7 327 33.3
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 2.1e-22 111.3 347 33.1
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 2.1e-22 111.3 330 30.6
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 2.1e-22 111.3 415 29.9
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 2.1e-22 111.3 283 38.5
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.7e-22 110.9 386 31.6
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 2.7e-22 110.9 266 36.5
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 7.9e-22 109.4 371 33.7
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.4e-21 108.6 461 30.4
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 1.4e-21 108.6 280 34.3
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.8e-21 108.2 284 34.9
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 2.3e-21 107.8 273 37.0
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.3e-21 107.8 389 31.6
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 6.7e-21 106.3 361 33.8
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 6.7e-21 106.3 275 34.9
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 6.7e-21 106.3 532 27.3
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.1e-20 105.5 381 31.2
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 1.5e-20 105.1 364 31.3
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 2.0e-20 104.8 374 32.1
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 2.5e-20 104.4 424 31.4
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 2.5e-20 104.4 332 29.8
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 2.5e-20 104.4 336 32.4
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.3e-20 104.0 374 32.1
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 4.3e-20 103.6 489 27.8
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 4.3e-20 103.6 436 30.3
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.3e-19 102.1 351 33.3
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 1.3e-19 102.1 274 33.9
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 4.8e-19 100.1 346 33.5
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.8e-19 100.1 412 29.4
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 6.3e-19 99.8 370 30.8
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 6.3e-19 99.8 370 30.8
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 1.4e-18 98.6 344 32.6
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.4e-18 98.6 324 31.8
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.4e-18 98.6 213 40.8
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 2.4e-18 97.8 289 33.2
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 2.4e-18 97.8 370 29.2
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.4e-18 97.8 359 32.0
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 2.4e-18 97.8 443 29.8
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 3.1e-18 97.4 372 30.1
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.1e-18 97.4 434 28.1
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.1e-18 97.4 412 29.6
BcaC09g50776 Brassica carinata HOM05D003765 ORTHO05D023707 4.1e-18 97.1 76 65.8
BolC1t02024H Brassica oleracea HOM05D003765 ORTHO05D023707 4.1e-18 97.1 76 65.8
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 5.3e-18 96.7 212 39.2
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 6.9e-18 96.3 380 31.1
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 6.9e-18 96.3 390 30.3
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.2e-17 95.5 435 29.4
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.5e-17 95.1 373 29.8
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 1.5e-17 95.1 352 33.0
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 1.5e-17 95.1 402 30.8
CARHR232840 Cardamine hirsuta HOM05D003765 ORTHO05D023707 1.3e-16 92.0 62 71.0
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.3e-16 92.0 378 28.0
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.7e-16 91.7 302 33.8
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 2.2e-16 91.3 385 29.1
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 2.2e-16 91.3 284 32.7
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.9e-16 90.9 239 36.4
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 5.0e-16 90.1 256 32.8
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.4e-15 88.6 335 30.4
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.4e-15 88.6 418 28.5
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 2.5e-15 87.8 433 29.3
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.5e-15 87.8 405 29.6
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 3.2e-15 87.4 321 32.1
C01p20970 Brassica napus HOM05D003765 ORTHO05D023707 4.2e-15 87.0 102 52.9
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 9.4e-15 85.9 345 29.9
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 1.2e-14 85.5 355 30.4
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.6e-14 85.1 343 29.4
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 2.1e-14 84.7 424 28.5
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 7.9e-14 82.8 372 29.3
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 2.3e-13 81.3 236 34.3
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.9e-13 80.5 406 28.6
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 5.1e-13 80.1 408 28.9
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 5.1e-13 80.1 326 31.6
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 6.7e-13 79.7 308 32.8
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 6.7e-13 79.7 312 29.2
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.1e-12 79.0 298 32.6
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 2.0e-12 78.2 272 33.8
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 4.4e-12 77.0 287 33.4
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 5.7e-12 76.6 274 34.7
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 7.4e-12 76.3 537 27.0
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.3e-11 75.5 418 28.9
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.7e-11 75.1 301 28.9
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.7e-11 75.1 352 30.7
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 2.2e-11 74.7 486 26.3
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 2.2e-11 74.7 476 27.1
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 6.3e-11 73.2 441 29.5
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 8.2e-11 72.8 338 29.9
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.4e-10 72.0 289 33.9
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 1.8e-10 71.6 482 26.1
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 4.1e-10 70.5 471 26.1
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 5.3e-10 70.1 259 30.5
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 5.3e-10 70.1 345 28.7
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 3.5e-09 67.4 285 30.5
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 4.5e-09 67.0 254 32.7
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 7.7e-09 66.2 274 28.1
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.7e-08 65.1 274 28.5
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 1.7e-08 65.1 208 36.1
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.7e-08 65.1 410 27.1
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 1.7e-08 65.1 200 31.5
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.8e-08 63.9 335 30.7
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 5.0e-08 63.5 239 32.2
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 8.5e-08 62.8 150 38.0
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.1e-07 62.4 409 26.4
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.9e-07 61.6 480 25.0
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 3.2e-07 60.8 471 25.1
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 4.2e-07 60.5 305 29.2
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 4.2e-07 60.5 168 33.3
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 5.5e-07 60.1 329 27.4
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 5.5e-07 60.1 329 25.8
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 7.2e-07 59.7 428 25.5


User provided reference genes

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