Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.7e-160 568.5 272 100.0
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 2.3e-151 538.9 272 94.1
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 6.6e-151 537.3 272 93.8
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 3.3e-150 535.0 272 93.4
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 4.3e-150 534.6 271 93.4
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 4.3e-150 534.6 272 93.4
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 4.7e-149 531.2 272 92.6
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 4.3e-134 481.5 272 84.6
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 5.6e-134 481.1 272 84.6
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.8e-133 478.8 272 84.6
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.6e-133 478.4 272 83.8
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 1.4e-132 476.5 271 84.1
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 9.9e-131 470.3 271 83.0
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 1.4e-129 466.5 270 82.6
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 5.6e-126 454.5 296 75.7
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 9.0e-124 447.2 272 79.0
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 4.5e-123 444.9 272 76.5
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.8e-122 441.8 275 79.6
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 8.4e-122 440.7 272 76.1
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.4e-121 439.9 270 75.6
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.1e-120 436.0 272 74.3
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.0e-119 433.7 272 74.6
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.0e-119 432.2 272 74.6
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 5.1e-119 431.4 266 76.7
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 6.7e-119 431.0 267 74.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 8.7e-119 430.6 269 74.7
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.1e-118 430.3 263 76.4
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 3.3e-118 428.7 269 75.1
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 5.7e-118 427.9 272 74.3
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 9.6e-118 427.2 266 73.7
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.3e-117 426.8 272 73.5
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.3e-117 426.8 271 74.9
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.1e-117 426.0 267 73.4
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.8e-117 425.6 269 74.0
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.7e-117 425.2 256 77.0
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 3.7e-117 425.2 266 72.6
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 3.7e-117 425.2 269 73.2
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 6.3e-117 424.5 258 77.9
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 8.2e-117 424.1 269 74.7
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.1e-116 423.7 272 73.2
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.1e-116 423.7 272 74.3
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.8e-116 422.9 261 75.1
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.1e-116 422.2 272 74.6
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 4.1e-116 421.8 283 71.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 5.3e-116 421.4 272 73.2
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.9e-116 421.0 272 72.8
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-115 420.2 256 76.6
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.2e-115 420.2 272 73.2
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 2.0e-115 419.5 272 72.4
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-115 419.1 269 72.1
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-115 419.1 269 72.1
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 3.4e-115 418.7 272 75.4
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.4e-115 418.7 268 72.8
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 3.4e-115 418.7 272 72.8
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.0e-114 417.2 271 73.4
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.0e-114 417.2 255 75.3
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.9e-114 415.6 263 72.6
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 2.9e-114 415.6 271 73.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 6.5e-114 414.5 265 73.2
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.4e-113 413.3 272 70.2
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.4e-113 413.3 262 72.5
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.4e-113 413.3 256 72.7
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.9e-113 412.9 275 73.1
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.5e-113 412.5 267 73.8
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.2e-113 412.1 259 75.3
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.2e-113 412.1 239 80.3
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.2e-113 411.8 275 72.7
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 5.5e-113 411.4 255 72.5
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 5.5e-113 411.4 272 73.2
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 7.2e-113 411.0 268 72.0
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 7.2e-113 411.0 272 72.8
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 9.3e-113 410.6 270 73.0
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 9.3e-113 410.6 272 72.8
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.6e-112 409.8 268 71.6
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.1e-112 409.5 268 72.4
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.1e-112 409.5 275 72.4
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.1e-112 409.5 272 72.4
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 4.6e-112 408.3 267 73.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.9e-112 407.5 259 74.5
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 7.9e-112 407.5 270 72.6
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.1e-110 403.7 260 73.5
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.5e-110 403.3 248 75.4
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 9.7e-110 400.6 265 72.8
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.3e-109 400.2 272 71.7
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.2e-109 399.4 274 70.8
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 2.2e-109 399.4 262 69.8
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.8e-109 399.1 212 87.3
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.1e-108 397.1 292 64.4
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.4e-108 396.7 274 71.2
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.4e-108 396.0 277 70.0
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.3e-108 394.8 290 64.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.9e-108 394.4 274 70.4
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 9.0e-108 394.0 258 70.5
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 2.6e-107 392.5 264 70.5
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.6e-107 392.5 282 68.4
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.7e-106 389.8 271 70.8
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.9e-106 389.0 241 75.9
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 6.5e-106 387.9 261 69.0
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 8.5e-106 387.5 253 71.5
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 9.4e-105 384.0 266 69.2
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 5.1e-103 378.3 288 64.6
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 5.1e-103 378.3 231 74.9
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.7e-101 373.2 271 67.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.2e-99 367.1 272 66.9
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.0e-99 366.3 262 67.9
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.0e-99 366.3 275 65.5
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.3e-98 363.6 235 71.9
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 2.9e-98 362.5 233 70.0
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 2.5e-97 359.4 220 75.0
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.2e-97 359.0 292 61.6
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.6e-96 356.7 238 66.4
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.0e-95 354.0 212 77.4
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.0e-95 352.4 233 67.8
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.8e-95 350.9 237 70.5
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.4e-92 342.8 234 63.7
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 4.1e-92 342.0 250 61.2
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 1.0e-90 337.4 229 65.5
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.3e-90 337.0 237 63.7
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.6e-86 322.8 309 53.7
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 9.7e-86 320.9 195 73.8
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.2e-85 319.7 221 68.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.3e-82 310.5 263 58.9
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 3.8e-82 308.9 233 63.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.2e-81 305.8 173 87.3
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.2e-80 303.9 339 48.7
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 3.0e-79 299.3 176 76.1
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.5e-78 297.0 291 52.9
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 2.0e-78 296.6 181 76.8
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.7e-75 286.2 200 64.5
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 7.7e-75 284.6 218 56.0
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 7.7e-67 258.1 164 70.7
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.4e-60 236.5 163 69.3
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.5e-59 232.6 138 76.8
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.6e-54 216.5 243 48.6
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.9e-53 213.0 213 53.5
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.5e-46 190.7 123 74.8
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 6.0e-43 178.7 124 67.7
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.1e-27 127.1 79 77.2
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.0e-26 124.8 107 57.9
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 2.8e-24 116.7 72 76.4
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 3.1e-23 113.2 81 66.7
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.4e-22 109.8 66 66.7
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.8e-22 109.0 65 70.8
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.4e-20 104.4 66 75.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.9e-17 94.0 90 56.7
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 5.6e-17 92.4 54 74.1
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 9.6e-17 91.7 61 77.0
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 4.8e-16 89.4 86 58.1
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 8.4e-13 78.6 69 53.6
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 9.3e-12 75.1 70 57.1
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.7e-11 73.6 55 61.8
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.8e-10 70.9 79 50.6
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.3e-10 70.5 60 65.0
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 9.6e-09 65.1 55 52.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.8e-08 63.5 67 49.3


User provided reference genes

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